Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01928 ATGGCCACCTGCAAAAATGTCTGTGCTCTTCTCCTTTTGCTTTTCTCCTCTTTTCTACATGTGAAGGCTATTTTAGACCCTGCTGATTTCCTCGCTCTGCAATCCATTCGTAAAGCCCTCGAAGACATGCCCGGTTCCCATTTCTTCTCCTCCTGGGATTTCACCGCAGACCCATGCAACTTCGCCGGGGTTTACTGCGACTCCGACAGGGTCATCTCCCTCAACCTCGGTGATCCCAGGGCTGGCTCACCCGGACTCACCGGCCGCCTCGACCCCGCCCTCGGCAAGCTCTCCGCGCTCGCCGAGTTCACCGTTGTCCCCGGCAGAATCTACGGTCCTCTCCCAGAATCCCTCTCCGATTTGAAGAACCTCAGGTTTCTCGGCGTCAACCGTAACTTCATCTCCGGCGAAATTCCGACCATGCTCGGCGAGTTACGCGGCCTCAGAACCATCGATCTCAGCTACAACCAACTCACCGGACGCATTCCTCCAACCGTGGGATCCCTACCGGAGCTGACTAACCTGATCCTCTGCCATAACCGCCTCTCCGGTTCGCTCCCTCGGTTCGAGTCACACACTTTAACACGGCTCGACCTAAAGCATAACTCTCTCTCCGGTTCGCTCCCTCCCAACTCGCTCCCTCCCTCTCTGCAGTACCTCTCCCTGGCCTGGAACCAGCTCACCGGCCCAATGGATCGCCTCCTGGGCCGCCTCGACCAGCTTAACTATTTGGACCTTAGTCTCAACCAGTTCACGGGCCCAATCCCGGACCGGATCTTTTCCTTCCCGCTCACGAATCTGCAGCTGGAGAGGAACCAGTTCTCGGGTGCGGTCCAGCCCGTTGAGCAGGTGTCCATCCCGACCGTTGATCTTAGTTACAACCGGTTGTCCGGTCAGATATCTCCAATGCTGGCGAGCGTGCAGTACCTGTACCTGAATAACAACCGGTTTTCTGGTCGGGTACCGGCTAGCTTCGTGGAGCGGTTGCTGGACGCCAGCATTCAGATACTTTACTTGCAGCATAACTATCTGACGGGGATTGAGATAAGCCCAACGGCGGTGATTCCAGAGAGAAGCTCCCTGTGTCTGCAGTATAATTGCATGGTCCCGCCCGTTGAGACGCCCTGCCCCTTGAGGGCTGGCAAGCAGAAAACCAGGCCTACTGCGCAATGCAACCAGTTGAAAACCTGA 1191 0.5668 MATCKNVCALLLLLFSSFLHVKAILDPADFLALQSIRKALEDMPGSHFFSSWDFTADPCNFAGVYCDSDRVISLNLGDPRAGSPGLTGRLDPALGKLSALAEFTVVPGRIYGPLPESLSDLKNLRFLGVNRNFISGEIPTMLGELRGLRTIDLSYNQLTGRIPPTVGSLPELTNLILCHNRLSGSLPRFESHTLTRLDLKHNSLSGSLPPNSLPPSLQYLSLAWNQLTGPMDRLLGRLDQLNYLDLSLNQFTGPIPDRIFSFPLTNLQLERNQFSGAVQPVEQVSIPTVDLSYNRLSGQISPMLASVQYLYLNNNRFSGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCLQYNCMVPPVETPCPLRAGKQKTRPTAQCNQLKT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01928 396 Gene3D Ribonuclease Inhibitor 192 372 IPR032675 -
Vian3g01928 396 Pfam Leucine Rich repeat 191 206 IPR001611 GO:0005515
Vian3g01928 396 SUPERFAMILY L domain-like 38 369 - -
Vian3g01928 396 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Vian3g01928 396 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 186 - -
Vian3g01928 396 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Vian3g01928 396 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 394 - -
Vian3g01928 396 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01928 Vian-Chr3 22868436 22869626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01928 86 326 Receptor kinase-like Gene Family AT5G62230 31.174 6.75e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01928 - - gmx:100800224 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01928 3 22868436 22869626 Vian3g01928 3 22868436 22869626 ECH
Vian2g02053 2 40270954 40272129 Vian3g01928 3 22868436 22869626 PCT