Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01916 ATGGCGGCAGGCCCAACCTCACCCTCCGATCGACCCACCATGGCCCCTCCCCCAATGCTCATCTCCGACTCAGTCGCCAAGGACGCCATACTCGCTTGGTTTCGAGGCGAGTTCGCTGCAGCCAACGCCATCATCGACGCCCTCTGCGCTCACCTGGCCACCTCTTCCCACGACTATGATGCCCTCTTCGCAGCCATCCACAACCGTAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATTGCCGACATCACCCTTGAGCTCCGCAGAGTCTCCGACAGAAACCCCAATGTTGACGACAAATCCAAATCTGACGAGAAAAAGACCTCGTCGGAGAGTTTAGTCGGAAATGGTGTGGCTGATGATCACGAGGAGTATGAATCCCCTGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAATCCCATGAATATTAATTTATGTTCCAATCATGAACATTGTGAAGGACGTTCTGCGCAGTTTAAGTTGACTAAAGGTTTCAGTGCAAAAGAGTCAGTCAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAGTTATATGAAGACATTTTCACAGATTTAGAACTATGCAAGCTGACAGACTTCGTGAATGAGATTCATGCTGCTGGCCAGAATGGGGAACTGTGTGGTAAAATGCCATTGATCTCTGAGTGCGAAACTTTTATATTATTCAACAAGCAGATAAAGGGAAACAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAGATAAAGGAGGATGTAAAAAGCAATATAGAGCCAATTCCTCCACTTCTCCAAGGTGTCATTGATCACCTGATTCAGTGGCAGTTACTTCCCGAGTACAAAAGACCAAATGGTTGTATTATCAACTTTTTTGAGGAGGGGGAGTTTTCTCAACCATTCCTCAAACCACCGCATCTGGATCAACCTGTATCCACTCTTCTTCTCTCTGAATCAACAATGGCTTTCGGACGTGTACTTATGAGTGAAAATGATGGAAACTACAAAGGACCTCTCATGCTCTCATTGAAGCAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCATGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGATTCCAATCAATGCCAGTCACCAACTCTTGCTATGACAAATGCGATGACTCTGTGGCAACCTGGCATTCCTAGTCCATATGCTTTGCCAAATGGTGCTCTAAGTAGCTATGAGGGTATGGACATGATGCCAAAATGGGGAATGCTTCCCGGTCCAATGGTGATGCTAACTCCAATGCGTCCTGTGGCACTGACTCCTCGCAAACTTGCTGGTGGTGGTACTGGGGTGTTTTTGCCATGGAATGTGCCATCTAGAAAACCTGTCAGGCATCTTCCCCCACGGGCCCAAAAAGGGAGGCTTCTCACATTACCTTCACCAGTTGAACCCCAAATGGGAGAATCCACTTCTGAACCTAGCAGCATCTGTGTTGAAGGATAA 1548 0.4755 MAAGPTSPSDRPTMAPPPMLISDSVAKDAILAWFRGEFAAANAIIDALCAHLATSSHDYDALFAAIHNRRLNWIPVLQMQKYHSIADITLELRRVSDRNPNVDDKSKSDEKKTSSESLVGNGVADDHEEYESPESEITDSGSQEMQANPMNINLCSNHEHCEGRSAQFKLTKGFSAKESVKGHMVNVVKGLKLYEDIFTDLELCKLTDFVNEIHAAGQNGELCGKMPLISECETFILFNKQIKGNKRELIQLGVPIFGQIKEDVKSNIEPIPPLLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRVLMSENDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTLAMTNAMTLWQPGIPSPYALPNGALSSYEGMDMMPKWGMLPGPMVMLTPMRPVALTPRKLAGGGTGVFLPWNVPSRKPVRHLPPRAQKGRLLTLPSPVEPQMGESTSEPSSICVEG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01916 515 SUPERFAMILY Clavaminate synthase-like 264 389 - -
Vian3g01916 515 MobiDBLite consensus disorder prediction 98 143 - -
Vian3g01916 515 MobiDBLite consensus disorder prediction 98 114 - -
Vian3g01916 515 MobiDBLite consensus disorder prediction 498 515 - -
Vian3g01916 515 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 128 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vian3g01916 515 MobiDBLite consensus disorder prediction 477 515 - -
Vian3g01916 515 Gene3D - 174 397 IPR037151 -
Vian3g01916 515 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 293 390 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01916 Vian-Chr3 22624981 22629595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01916 K10767 - gmx:100791586 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01916 3 22624981 22629595 Vian3g01916 3 22624981 22629595 ECH
Vian2g02067 2 40375868 40381807 Vian3g01916 3 22624981 22629595 PCT