Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01907 ATGGAAAAAGAGAGAAGAATTGCGGGTGGAAGAGAAGAAGGAGAAGAGATGAGTGATCTTGACCAAGTGGTGCTTCTGAGTGTGGCTGTAGCGCTGGTTGAAGTTGAAGGTATGTTCTGCAAAACCAAAACCCACACTCTTTTCTACCATAACAAGGCAAGAACTATATCAAGCCTCAAAGTAGTGTGGCGCAAGGATCCAACACTGGACCGAGCTATAGAGTACGACAAGCGTTACAAGCAATGTGCCCGCGTCGTCAAAGAAGTCCTCAACGAACCAGGCCAAGGCATTCCTCTACGCTACCTCGAGAAGCGCCGCGAAAGGATGCGCCTCAAGGTCAAAGCTGAAACCTTTATCAACCAAAACCCCGGTTTGTTCGATGTCTACTACAGTCGCATCAAACCCAAAACCGAACCGGTTCGCTTCATACGCCCTTCCGACCGCCTTCACTGCTTTCTCCAGGAAGAGCAACGGATTTTCTCCGAGAACGAACCCTTCATTGTCTCCAAGTTATGTAAACTGTTAATGATGTCCAAGAACAAGTTTATCAGTGCTGATAAGTTGCTTCACGTGAAGAGGGAGTTCGGGTTTCCTAACGATTTTTTGGTTGATTTGGTTCCTCGCTATCCGCAATATTTTAGGTTAACTGGGTCTCCTGGAGAGGGGAAATCATTTCTTGAATTGGTTGATTGGAATCCCGAGTTTGCAAAATCTGTTATTGAGAAAAGAGCCGAGGAGGAGAGTGACCGATTGGGGATTAGGGTTAGGCCTAATTTCAATGTGGAGCTACCGCCAGGGTTTGTGTTGAAGAAGGAGATGAGAGAGTGGGTTAGGGATTGGCTGGAGCTTGATTATGTGTCCCCTTATCAGGATGTGTCCCATTTGGACCAGGCTTCCAGAGAGATGGAGAAGAGATCCGTTGGAGTGTTCCATGAACTGCTTTCTCTTTCCTTGCATAAGAGGATTCCGGTTCCGATCCTTGGAAAGTTTTGTGATGACTATAGGTTTTCCAATGCGTTTTCCACCACTTTTACCCGGCATTCGGGGATATTCTATCTGTCCTTGAAAGGTGGGATTGAGACGGCAGTGCTGAGAGAAGCATACCGAGGTGAGGAGTTGATTGACCGTGATCCGTTGCTTCGGATAAAAGATAAATTTGTTGAGTTGTTGGAGGAGGGATGGCGGCAAAGAAAGGAGCAATTGATGTTGAAGCAAGAAAGGATTAAGGAAGATATGGAGCTATTGGCGACGAAAGTTGGTGAATGA 1266 0.4652 MEKERRIAGGREEGEEMSDLDQVVLLSVAVALVEVEGMFCKTKTHTLFYHNKARTISSLKVVWRKDPTLDRAIEYDKRYKQCARVVKEVLNEPGQGIPLRYLEKRRERMRLKVKAETFINQNPGLFDVYYSRIKPKTEPVRFIRPSDRLHCFLQEEQRIFSENEPFIVSKLCKLLMMSKNKFISADKLLHVKREFGFPNDFLVDLVPRYPQYFRLTGSPGEGKSFLELVDWNPEFAKSVIEKRAEEESDRLGIRVRPNFNVELPPGFVLKKEMREWVRDWLELDYVSPYQDVSHLDQASREMEKRSVGVFHELLSLSLHKRIPVPILGKFCDDYRFSNAFSTTFTRHSGIFYLSLKGGIETAVLREAYRGEELIDRDPLLRIKDKFVELLEEGWRQRKEQLMLKQERIKEDMELLATKVGE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01907 421 Pfam Plant organelle RNA recognition domain 65 394 IPR021099 GO:0003723
Vian3g01907 421 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 50 405 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01907 Vian-Chr3 22422410 22425009 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01907 - - vum:124828979 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01907 3 22422410 22425009 Vian3g01907 3 22422410 22425009 ECH
Vian2g02940 2 50093738 50094961 Vian3g01907 3 22422410 22425009 PCT