Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02940 ATGAACAAAATTGGCGTCATTCCGTGGATGAGGCAGCAATGGCGGGGCATAGTGAAAGTGCGTTTGAAATGGGTGAAGAACCGAAGCCTCGACCACGTCATCGACAAGGAAACCGATCTCAAAGCGGCCTGTCTCCTGAAAGACGCTATCAACCGCTCTTCCACCGCCTTCCTCACGGCGAAATCCGTGGCAGACTGGCAGAAGCTCCTCGGCCTCACCGTCCCCGTCCTCCGCTTCCTCCGCCGCTATCCCACCCTCTTCCAAGAGTTCCCGCACCCGCGCTGGCCCTCCCTCCCCTGCTTCCGCCTCACAGACACTGCACTTTTTCTCCACTCCCAGGAACTCGCACTCCACCAAGCTCACCAAAACAACGCCGTCGAACGCCTCTCCAAGCTCCTCATGATGACCCGCTCACGCGCCCTGTCCCTCTATTCCCTCCACTCGCTCAAGTGGGACCTCGGCTTACCCGACTCCTTCGAGAAAACCCTCGTCCCCAACTTCCCTAACGACTTCCAGTTTGTCAAGTCCAACGGCGTCGTTTCGCTCAAACTAGCACGATGGCCTGAGGAGTTCGCTGTGTCCGCGCTGCAACAGAAAAACGAGTGTGGGACCCACTACCGGGAATTCAAGCGGGGACAATCGGCGTTGGCTTTTCCGATGAAGTTTCCCAGGGGTTACGGCGCGCAGAAGAAGGTGAGGACGTGGATGGAGGAGTTTCAGAAGCTGCCTTATGTTTCTCCCTATGCTGATTCCTCCAAGATTGATCCCAACAGCGATTTGATGGAGAAGCGCGTGGTTGGGGTTCTGCACGAGCTTTTGAGTTTAACTCTGCACAAGAAAACAAAGAGGAACTACTTGAGGAGCTTGAGGGAAGAGTTGAATCTTCCGCACAAGTTTACCCGGATTTTCACTCGGTATCCCGGCATTTTTTACCTCTCATTGAAGTGTAAAACGACCACTATTACTCTCAGGGAAGGTTACCAGAGTGGGAAACTGATTGACCCCCACCCTCTTGTCCGACATAGAGATAAATTCTACCGTGTCATGCAGACGGGGCTTCTCTATCGCGGGGATGGGTCATTGAAACACGACGGCAACAATTCGTTGGTCGAGAATGATGAGCTAAGAAGTGAGGAATCCGGGGAGGAAGAGGTTGATACGAGTGATGAATTATGTGAGGGTGAATCGAGTGATGAACTCTGCGAGGGTGAAGCGAGGGAATAA 1224 0.5368 MNKIGVIPWMRQQWRGIVKVRLKWVKNRSLDHVIDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELALHQAHQNNAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVVSLKLARWPEEFAVSALQQKNECGTHYREFKRGQSALAFPMKFPRGYGAQKKVRTWMEEFQKLPYVSPYADSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLIDPHPLVRHRDKFYRVMQTGLLYRGDGSLKHDGNNSLVENDELRSEESGEEEVDTSDELCEGESSDELCEGEARE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02940 407 MobiDBLite consensus disorder prediction 376 398 - -
Vian2g02940 407 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 15 382 IPR045040 GO:0003723
Vian2g02940 407 MobiDBLite consensus disorder prediction 365 407 - -
Vian2g02940 407 Pfam Plant organelle RNA recognition domain 25 352 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02940 Vian-Chr2 50093738 50094961 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02940 - - vun:114164383 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02940 2 50093738 50094961 Vian2g02940 2 50093738 50094961 ECH
Vian2g02940 2 50093738 50094961 Vian3g01907 3 22422410 22425009 PCT