Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01889 ATGGTGGGCCCCTTCAGCGCCGTCGATCGCAGGGTGGTTAGAGTCGCCATCGTAGGCGACTGTGGTACCGGAAAATCCACACTCATTGCCGCAATGGCGTCGGAATCTTTCCCCAAGTCCGTTCCGCCCGTGCTCCCTCCTACTCACCTGCCTCATAATATCTACCCCGATTCCGTTCCTCTTACCCTCATTGACACACCTTCCAGGTCTCTGCCACACTCGCATTCCTTCTCCGCGCGCTATTCAATTCAAGCAAAACAAAAGAAAACTGACAGTAGCGAGCGCAGTGAAGAATTGAAGCGAGCTGACACGGTGGTCTTAACCTATGCTTGCGACGAACCGTTGAGCTTTGAGCGTTTGAGTACTTACTGGCTCCCTGAACTGCGGAAGTTGGAGGTGAAGGCACCTGTGATTGTAGTTGGCTGTAAGCTTGACCTTCGGAATGAAAATCAGCTAGTGAGCTTAGAGAGTCTCACAACAAATATCATGCAACAGTTCACAGAAATTGTCACTTGTGTTGAATGCTCTGCTGTTACACTTTACCAGGTCCCAGAAGTTTTTTATTTTGCCCTAAAAGCAGTACTGCATCCAGTAGATCCGTTGTTTGATTATAAAAGACATGGTTTGACAGATCCATGTGTGAGGGCTTTAAGAAGAATATTTATTCTATGCGATCAAGACATGGATGGTGCTCTCAATGATGAAGAGCTAAATGAGTTTCAGGTTAAATGCTTCAATGCAGCATTGCAGCCATCTGAAATAGTAAAAGTCAAATCGATTGTGCAGCAGAAAGTACCTGACGGAGTCAACTCTGTTGGTCTTACCTTTCCAGGCTTTATTTATGTCAATAACATGTTTCTACAGAAAGGGCGAACAGAGACATTGTGGGCCGTTCTAAGAAAGTTTGGATATGATAATAATTTAAAACTTCGGGATGATTTCCTTCCAATTCCATCCATGCATGCTTCTGATCAGAGTGTGGAGCTGACATGTGAAGCCGTAGAGTTTCTGAATGATATCTTTCAATTGTTAGATACAGATAAAGATCTAACTCTACGACCTGCCGAAGTTGATAACCTATTTGATACTGCTCCAGAAAGTCCATGGAACAATGCTCCATATAAGGATGCAGCAGAGAAAACTGATACGGGCTATATCTCTCTAAATGGATTTTTGTCTCAGTGGGCCCTCATGACATTACTTGATCCAAAACTTAGCTTGGCTAATTTGATTTACATTGGATATAAGGGTAATCCTGCTGCAGCACTCCATGTCACTCGTAAAAGATCATTAAATCGCAAGAAGCAAACTACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACAGGCTGGGAAATCTGCTTTGCTGTACTCGTTACTGGGAAGGCCTTTCTCAAATAATTATATTCCAACAACAGTTGAGCAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTGAGGATGGTATTGTTTTATGATGTGAAAACCAGCATGGTAGACATTGTTGTGGAAGTTAAATTGGAACAAGATGCATTCTATATACTCATAATCCTGACGATTGCTATACAGGTAACCCGGAAAATTCTCATATTGCGTGAGATACCTGAGGATAGATTACCGGAACTTTTATCAAATCAGGATTTTTTGGCTGCATGCGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAGTATTCATGGAAGAAATCCAGAGATTTGCTTGATAAGGTCGTTAAAAATGGAGAACTAACTGGTTATAGAACCCCTTGCCTGGTTATCGCTGCTAAGGATGATTTATCTCCATTGCCAAGGGCAGTACTAGATTCATTTAAGGTTAGCCAGGAATTGGGAATAAAGGCACCTGTTCACGTCAGTATGAAACTAGGTGATTCGAGTAATGTGTATAACAAAATTATTAATGCAGCAGAAAACCCTCATTTGAGCATTCCAGAAACTGAGATTTCGCGAAGAAAGAAGCAACACCACCAGTTTCATCGCTCTCTGATTTTTGCCTTGGTTGGGGCTGCTATGGCGGTTGCCGGTTTGACAGCTTGTCGCGTGCGCGCAGCGAAGAAGAATGCTACTACTGCTTAG 2103 0.428 MVGPFSAVDRRVVRVAIVGDCGTGKSTLIAAMASESFPKSVPPVLPPTHLPHNIYPDSVPLTLIDTPSRSLPHSHSFSARYSIQAKQKKTDSSERSEELKRADTVVLTYACDEPLSFERLSTYWLPELRKLEVKAPVIVVGCKLDLRNENQLVSLESLTTNIMQQFTEIVTCVECSAVTLYQVPEVFYFALKAVLHPVDPLFDYKRHGLTDPCVRALRRIFILCDQDMDGALNDEELNEFQVKCFNAALQPSEIVKVKSIVQQKVPDGVNSVGLTFPGFIYVNNMFLQKGRTETLWAVLRKFGYDNNLKLRDDFLPIPSMHASDQSVELTCEAVEFLNDIFQLLDTDKDLTLRPAEVDNLFDTAPESPWNNAPYKDAAEKTDTGYISLNGFLSQWALMTLLDPKLSLANLIYIGYKGNPAAALHVTRKRSLNRKKQTTERNVFQCYVFGSKQAGKSALLYSLLGRPFSNNYIPTTVEQYAANVIELKGVRMVLFYDVKTSMVDIVVEVKLEQDAFYILIILTIAIQVTRKILILREIPEDRLPELLSNQDFLAACDVAVFVYDSSDEYSWKKSRDLLDKVVKNGELTGYRTPCLVIAAKDDLSPLPRAVLDSFKVSQELGIKAPVHVSMKLGDSSNVYNKIINAAENPHLSIPETEISRRKKQHHQFHRSLIFALVGAAMAVAGLTACRVRAAKKNATTA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01889 700 ProSiteProfiles Miro domain profile. 440 647 IPR020860 GO:0003924|GO:0005525
Vian3g01889 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 652 IPR027417 -
Vian3g01889 700 Gene3D - 310 496 - -
Vian3g01889 700 Gene3D - 9 199 IPR027417 -
Vian3g01889 700 Gene3D - 204 308 - -
Vian3g01889 700 Pfam EF hand associated 248 331 IPR013567 -
Vian3g01889 700 PIRSF Miro 9 521 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vian3g01889 700 PIRSF Miro 518 699 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vian3g01889 700 SMART rho_sub_3 15 197 IPR001806 GO:0003924|GO:0005525
Vian3g01889 700 Pfam EF hand associated 369 436 IPR013566 -
Vian3g01889 700 PANTHER RHO FAMILY GTPASE 444 644 IPR003578 GO:0005525|GO:0007264
Vian3g01889 700 Pfam Ras family 96 195 IPR001806 GO:0003924|GO:0005525
Vian3g01889 700 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Vian3g01889 700 SUPERFAMILY EF-hand 200 398 IPR011992 -
Vian3g01889 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 229 IPR027417 -
Vian3g01889 700 FunFam Mitochondrial Rho GTPase 204 308 - -
Vian3g01889 700 ProSiteProfiles Miro domain profile. 10 196 IPR020860 GO:0003924|GO:0005525
Vian3g01889 700 SMART rab_sub_5 13 197 - -
Vian3g01889 700 ProSitePatterns EF-hand calcium-binding domain. 225 237 IPR018247 -
Vian3g01889 700 FunFam Mitochondrial Rho GTPase 545 646 - -
Vian3g01889 700 Gene3D - 498 667 IPR027417 -
Vian3g01889 700 PRINTS Transforming protein P21 ras signature 13 34 - -
Vian3g01889 700 PRINTS Transforming protein P21 ras signature 172 194 - -
Vian3g01889 700 PRINTS Transforming protein P21 ras signature 133 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01889 Vian-Chr3 22094643 22109200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01889 3 697 EF-hand Containing Proteins AT3G63150 53.736 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01889 K07870 - gmx:100806983 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02100 2 40752419 40760603 Vian3g01889 3 22094643 22109200 PCT