Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02100 ATGGCAAATCAGTCAAGCTTCGGCGGTCGCAGTGGAGTTCGAGTAGTGGTCATCGGCGACCGCGCCACCGGAAAATCGAGCCTGATAGCTGCCATCGCGACGGAGTCATTTGCCGAGTCCATTACGCCGGTTATTCCGCCCACTCTTTTGCCCCCTGATTTGTTCCCCGATAAGGTTCCTCTTACCGTCATTGACACATCTTCCAGCTTGGATAAACAAAGCAAGCGTAACGAAGAGTTAAAAAGAGCTGATGTTGTGGTTTTAACCTATGCTTGCAACGACACGGCTTCGTTTTCTCGGTTGAGTTCTTACTGGTTCCCGGAACTGCATAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACACAGCTACTGCAACAGTTCAAGGAAATTGTCACATGCATTGAATGCTCTGCTGCTACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTGCATCCAGTAGATCCATTGTATAATATTGGAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTCAATGAAGCAGAACTAAATGATTTTCAGGTTAGATGTTTCAATGTACCATTGCAATCATCTGAAATGGCTGAGGTCAAATCAGTTGTACAGCAGAAAGTACCAGAAGGGGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTGTGTTCATAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTCCTAAGAAACTTTGGATATGATAATCATTTGAAACTGAAGGATGATTTCCTTCCTGTTCCGGCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTATTAGATTCAGATAAAGATCGAGCCCTACGACCTGCTGAAATTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCTTGGAATGATGGTCCGTATAAGGATTCTGCTGAGATGAATGACATGGGTTACATATCTCTTAATGGATTCTTGTCACAGTGGACCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCGGCAGCAGCTCTCCGTGTTACTCGGAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTGTAAAAGTTCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCGTTCTCAAACAATTACATTCCATCTACAGTTGAAAGGTTTGCAGTAAATGCCGTTGAATTAATTGGGGGAGCCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTAAAGTATCAAATGTTTTTTCAAATAAGGACTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACTTTCATGGAGGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGAGAAGGAGATCTAACCGGTTATAGAGTTCCTTGTCTCCTCATTGCTGCTAAGGATGATTTAACGCCATATCCAAGGGCAGTACAAGATTCAGTAAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCACGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACAATAAGATTGTCCATGCTTCTGAGCACCCTCATTTAAGCATTCCGGAAACTGAGATTGGCAAGAAAAGAAAACAATACCATCGGCTTCTTCAGCACTCGCTTGTTTTTGCCTCAGTTGGGACTGCAATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGCGAAGAAGAATTCGTCTGGTTAG 1932 0.4317 MANQSSFGGRSGVRVVVIGDRATGKSSLIAAIATESFAESITPVIPPTLLPPDLFPDKVPLTVIDTSSSLDKQSKRNEELKRADVVVLTYACNDTASFSRLSSYWFPELHKLEVKVPVIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYNIGSQALTDRCVRALRRIFVLCDRDMDEALNEAELNDFQVRCFNVPLQSSEMAEVKSVVQQKVPEGVNSLGLTFPGFICVHNMFLKKGRPETLWAVLRNFGYDNHLKLKDDFLPVPAKRALDQSVELTGEAVEFLNGIFRLLDSDKDRALRPAEIDKLFCTAPESPWNDGPYKDSAEMNDMGYISLNGFLSQWTLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGCKSSGKSALLDSLLGRPFSNNYIPSTVERFAVNAVELIGGARKTLVLREIPESKVSNVFSNKDYLAACDVAVFVYDSSDELSWRKSRDLLEKVAREGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVHASEHPHLSIPETEIGKKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAAKKNSSG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02100 643 ProSiteProfiles small GTPase Rab1 family profile. 3 205 - -
Vian2g02100 643 FunFam Mitochondrial Rho GTPase 488 589 - -
Vian2g02100 643 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Vian2g02100 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Vian2g02100 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 593 IPR027417 -
Vian2g02100 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Vian2g02100 643 PANTHER RHO FAMILY GTPASE 13 181 IPR003578 GO:0005525|GO:0007264
Vian2g02100 643 CDD Miro2 420 602 - -
Vian2g02100 643 FunFam Mitochondrial Rho GTPase 10 180 - -
Vian2g02100 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Vian2g02100 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Vian2g02100 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Vian2g02100 643 Pfam EF hand associated 350 417 IPR013566 -
Vian2g02100 643 Gene3D - 291 481 - -
Vian2g02100 643 SMART ras_sub_4 14 178 - -
Vian2g02100 643 FunFam Mitochondrial Rho GTPase 291 481 - -
Vian2g02100 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 209 IPR027417 -
Vian2g02100 643 Gene3D - 10 180 IPR027417 -
Vian2g02100 643 Gene3D - 489 588 IPR027417 -
Vian2g02100 643 SUPERFAMILY EF-hand 178 378 IPR011992 -
Vian2g02100 643 PIRSF Miro 9 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vian2g02100 643 SMART rab_sub_5 13 178 - -
Vian2g02100 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Vian2g02100 643 FunFam Mitochondrial Rho GTPase 185 289 - -
Vian2g02100 643 Gene3D - 185 289 - -
Vian2g02100 643 Pfam EF hand associated 229 312 IPR013567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02100 Vian-Chr2 40752419 40760603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02100 1 641 EF-hand Containing Proteins AT3G63150 57.722 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02100 K07870 - gmx:100803790 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02100 2 40752419 40760603 Vian3g01889 3 22094643 22109200 PCT