Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01871 ATGGGTTTTAGAGGGTTTATGTTGTGTCTAGTTACGGTTATGGTGGGAACCATATGGACTAAAAATGCTACTGCTCAATCAGGTTGCACCAGTACACTGACTAGCTTGAGCCCTTGCCTGAACTACGTAATGGGAAGTTCTTCAACCCCATCAGGTCCATGTTGCTCACAGCTCTCAAGCATTGTCCAATCTTCACCACAGTGCCTTTGCTCCGTCCTCAATGGTGGTTCCACTTTCGGAATTACCATTAATCAGACTCTTGCTTTGTCTCTCCCTGGCGCTTGTAAAGTTCAAACACCCCCAGTTAGCCAGTGTCAAGCTGGGAATGGACCAACACCTCCTTCCACTGCTCCACTTGCTTCTCCTTCTGATTCCTCAGCTGAATCACCTCAAGAGTCGATATCACCTTCTTCTTCAGACTTTCCCTCAGGTGCGGGATCTAAAACGGTTCCATCAATAGATGGTGGTTCATCTGATGGAAACGCTATTGAAGTCCGCTCTCACTTGGTGTTCTATCTTATTGCCATTGTGTCTTGTGTCTTAACCTTCATCAAGTTCTGA 561 0.4635 MGFRGFMLCLVTVMVGTIWTKNATAQSGCTSTLTSLSPCLNYVMGSSSTPSGPCCSQLSSIVQSSPQCLCSVLNGGSTFGITINQTLALSLPGACKVQTPPVSQCQAGNGPTPPSTAPLASPSDSSAESPQESISPSSSDFPSGAGSKTVPSIDGGSSDGNAIEVRSHLVFYLIAIVSCVLTFIKF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01871 186 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 26 104 - -
Vian3g01871 186 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Vian3g01871 186 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Vian3g01871 186 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Vian3g01871 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 9 150 IPR043325 -
Vian3g01871 186 Pfam Probable lipid transfer 12 105 IPR016140 -
Vian3g01871 186 SMART aai_6 29 105 IPR016140 -
Vian3g01871 186 MobiDBLite consensus disorder prediction 102 156 - -
Vian3g01871 186 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 106 IPR036312 -
Vian3g01871 186 Gene3D - 26 105 IPR036312 -
Vian3g01871 186 CDD AAI_LTSS 36 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01871 Vian-Chr3 21739632 21740446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01871 1 184 Acyl Lipid Metabolism Gene Families AT2G48130 41.799 3.74e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01871 - - gmx:100306151 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01871 3 21739632 21740446 Vian3g01871 3 21739632 21740446 ECH
Vian3g01871 3 21739632 21740446 Vian2g02128 2 41146281 41147116 PCT