Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01857 ATGAGGACTTTCTTCACTGCGGAATCATGTAAAGAAGCACATCCTAATGCTTTAAACCCACAATCCTGGCTCCAAGTTGAAAGAGGCAAGCTTCCCAAGTTGTCATCGCAGTCCTCATCTTCATCAATAGAATCTCTAATCAAGGTCCCACAGCCACCTATACTCCCATTCTTCAAGCCTGTTGATTATGTGAAAGTTTTAGCTCAAATTCATGAAGAACTTGAGCTCTGCACTCCGCAGGAGCAGTCAAATCTGTTTTTGTTACAGTACCAGGTCTTTAGGGGCATGAGGGATGTTAAACTGATGCGGAGAAGCCTCCGGTCAGCTTGGCAGAGAGCAAACACTGTTCATGAGAAGATTATATTTGGAGCATGGCTGAAGTATGAGAAGCAAGGGGAAGAATTAGTTGCTCAGTTGCTAACAGCTTGTGGTAAATGTGAAAGGGTATTTGAACCCATAAATGTAGAATCTCATATTTCTTTTGACAAAGTTGTAATTTCCCAGGATAGAGTTTCCATGAATGATGGGAACCACACTTCACAGTATGTAATCTTTACAGTCGGAGATGAGAAGATAGTCTGTGATAGACAAAAGATTTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGGTGTTTCAGGGAATCGCTTTCTGAGACCGTCGATTTGTCTGAAAACAACATCTCTCCTTCAGGTATGAGGGCAATAAAGTATTTTAGCTTGACCGGCAGTTTGCTTGATGTCCCTCAGAATCTTTTGGTGGAGATATCAGTTTTTGCAAACAAGTATTGTTGCGAAAGACTAAAACTGGCCTGTGATAGAAAACTTGCATCCTTAGTTTCCTCCAGAGAAGATGCACTGGAACTCATGGAATATGCTGTGGACCAGAATTCATCTGTGCTTGGTGCTTCTTGTTTACAAGTGCTTTTACGCGATATTCCCAACTGTCTGAGTGACAAAAGGGTTGTGGAGTTATTTATTCATGCTAACAGGAAGGAGTTGGAAGTCATGGTTGGGCCTGGTATATTTGCACTTTTTTGTTTCTTAAGCGAAGTTTCTATGAACCTTAGTTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTGGTTGATTTTGCTGAAAATGACATACAGAGAATGCTGGCATTTCATGAATTGGGATGTGTAAGGCTTTCAAGGAAGGAATATGATGAAGCCTATGGTCTTTATGAGAAGGCTGCAAAGGCAGGCCATATTTATTCCGTTGCAGGTTTAGCTAGACTGGATTCTATAAAGGGTGAGAAGCTTTTACCTTATCAGAAGATAAGTTCAATCATTTGTTCTGGTGCTCCACTTGGATGGATGTACCAGGAAAGATCACTGTACTGTGATGGTGATGTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTTGACCCAACTCTTGTATATCCCTACATGTATAGGTCTGCCACTTTAATAAGGACAGAAAATGTTGAAGGTGCATTGTCTGAAATCAACCGGATTCTTGGCTTCAAACTTTCATTAGAGTGTTTGGAACTACGGTTTTTCATCTATCTGGCCCTTGAGGACTACAAAGCGGCACTCCGAGATGTTCAAGCAATTCTTACCCTGTGTCCATCTTATAAAATGTTTGAAGGGCGTGTAGCTGCATCTCAGCTCTGTACTCTTGTGCGTGAGCATGTTGAACATTGGACAACTGCAGATTGTTGGGCACGATTGTATGACTGTTGGTCTGCAGTTGATGATATTGAGTCTCTTTCTGTCATCTACCAGATGCTTGAATCTGATGCTGCCAAAGGTGTTCTATACTTCAGACAGTCGTTGCTTCTCCTTAGGCTAAGCTGTCCTGAGGCAGCCATGAGGAGTTTACAGTTAGCTTGGGAACAGGCATCAAGTGAGCATGAAAGGCTTGTGTATGAGGGGTGGATCTTGTATGATTCAGGACATTACGAAGAAGGGCTCCAAAAGGCTGAAGAGTCTATTACTATTAAAAGGTCTTTTGAGGCCTACTTCCTAAAAGCCTATGCATTGGCTGACTCTAGTGTAGATTCATCATGTTCTTCAACTGTCATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCGGATAATCTGCGCAAGGGTCAGGCTCTAAACAATCTTGGAAGTGTTTATGTTGATTGCGGGAAACTAGACGCAGCAGAAGAATGCTATGTGAAGGCCCTTAAAATCCAGCACACGCGAGCCCATCAGGGTCTTGCTCGTGTTCATTTTCTCAGAAATGACAAGGCTGCTGCTTTGAAGGAAATGACCAATCTTATTGAGAGGGCAAGAAACAATGCTTCAGCTTACGAGAAGAGATCTGAGTATGGTGATCGTGAACTCACAAAGGCTGATCTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCACAAGGAAGAGGAAGCCATTGGTGAACTCTCCAGAGCAATTGCATTTAAAGCTGATTTGCATCTGTTGCATCTTCGTGCAGCATTCCATGAACACAAGGGAGATGTCTTAAGTGCATTGAGAGATTGTCGTGCTGCACTCTCTGTTGACCCAAATCATCAGAAAATGTTGGAACTTCACTATCGTGTTAATAGTCACGAGCCATGA 2667 0.4259 MRTFFTAESCKEAHPNALNPQSWLQVERGKLPKLSSQSSSSSIESLIKVPQPPILPFFKPVDYVKVLAQIHEELELCTPQEQSNLFLLQYQVFRGMRDVKLMRRSLRSAWQRANTVHEKIIFGAWLKYEKQGEELVAQLLTACGKCERVFEPINVESHISFDKVVISQDRVSMNDGNHTSQYVIFTVGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETVDLSENNISPSGMRAIKYFSLTGSLLDVPQNLLVEISVFANKYCCERLKLACDRKLASLVSSREDALELMEYAVDQNSSVLGASCLQVLLRDIPNCLSDKRVVELFIHANRKELEVMVGPGIFALFCFLSEVSMNLSSSSDTTAHFLERLVDFAENDIQRMLAFHELGCVRLSRKEYDEAYGLYEKAAKAGHIYSVAGLARLDSIKGEKLLPYQKISSIICSGAPLGWMYQERSLYCDGDVRWKDLEKATELDPTLVYPYMYRSATLIRTENVEGALSEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLSCPEAAMRSLQLAWEQASSEHERLVYEGWILYDSGHYEEGLQKAEESITIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDAAEECYVKALKIQHTRAHQGLARVHFLRNDKAAALKEMTNLIERARNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIGELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQKMLELHYRVNSHEP 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01857 888 Gene3D Tetratricopeptide repeat domain 587 774 IPR011990 GO:0005515
Vian3g01857 888 Pfam Tetratricopeptide repeat 712 742 IPR001440 GO:0005515
Vian3g01857 888 SUPERFAMILY TPR-like 383 740 IPR011990 GO:0005515
Vian3g01857 888 Coils Coil 756 783 - -
Vian3g01857 888 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105
Vian3g01857 888 SUPERFAMILY TPR-like 694 880 IPR011990 GO:0005515
Vian3g01857 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515
Vian3g01857 888 SMART tpr_5 637 670 IPR019734 GO:0005515
Vian3g01857 888 SMART tpr_5 511 544 IPR019734 GO:0005515
Vian3g01857 888 SMART tpr_5 382 415 IPR019734 GO:0005515
Vian3g01857 888 SMART tpr_5 711 744 IPR019734 GO:0005515
Vian3g01857 888 SMART tpr_5 840 873 IPR019734 GO:0005515
Vian3g01857 888 SUPERFAMILY POZ domain 183 278 IPR011333 -
Vian3g01857 888 Gene3D Tetratricopeptide repeat domain 375 566 IPR011990 GO:0005515
Vian3g01857 888 Gene3D Potassium Channel Kv1.1; Chain A 177 320 IPR011333 -
Vian3g01857 888 Gene3D Tetratricopeptide repeat domain 783 885 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01857 Vian-Chr3 21502618 21506109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01857 712 872 Glycosyltransferase AT3G04240 26.901 4.96e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01857 - - gmx:100785039 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02141 2 41292383 41303804 Vian3g01857 3 21502618 21506109 PCT