Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01816 ATGAGATTATCGTATTTGGTTCTTTTGTTGATGTTTACAGAGTATAATGGAAAGCCAACCTTCACACAGATCGTGGTGGCTTCCTCCATTGGGTTGATATTTGCTGCAGCAATGCATTATCGACTTAAGAAAATGAGAGATCGAAAGACCATTCCACGTCTGAGAATATCAAAAGCAAACCGTACCCCAAAGCTTGAAAAGTTTCCTCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGAAGATGTTGTCCTCATCTTTGTAAATTGGCTTCTGAATACATAAGGAAATCCGAGGGATGTGAAAATGATCTCTATGCCTTCTTTGAGAATGAACCAGATGCCGATTCGCTTTTTGTGAAGCTTGTGGAAGAGTTTGAGAGATGCATTCTCAGTTACTTTGCATTCCATTGGAGACATGGTGATATTTTGATAAGTCAGGTATCTACATCTGTGAAAAACTCTTTTCTTTGTTGTCTGGAATTGCAGGTGTTTAGCTCTGAAATTGAACCAAGGGCAAAGCTCAGGCACATAGTTATGGCAGCAACTAGGGAACAAAGGATCGACAGAGTGACCAAGAATCTGAAGGTGGCTAGAGTTTTCAACACATTAGTGGAAGAAATGAAAGCAATGGGACTGACAAATGATGACTCCCAATGCACAGAGGTGATGGCTCCAGTGGCTCACAGTGATAGGAGCCCAGTGCTTCTTTTCATGGGTGGTGGCATGGGAGCTGGCAAAAGCACTGTACTTAAGGACATTCTTAAAGAACCTTTCTGGGCAGGAGCAGCAGGCAATGCTGTCATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTTATCTATAGGGCCCTCAGTGCAAGAGGGCATCAGGACATGATTAGAACAGCTGAACTGGTACACCAATCATCAACTGACGCAGCCTCATCCCTCCTGGTGACAGCACTAAATGAGGGGCGTGATGTAATAATGGACGGTACACTCTCCTGGTTACCATTTGTTGTGCAAACAATAACAATGGCTAGAAATGTCCACCGCCGCCGCTACCGCATGGGACCTGGCTACAAGATGAATGGCGATGGAACTGTCACTGAAAACTATTGGCAGCGAATTGATGAAGAGCAAGACCGGGTTGAAGGAAAAAGGAGAAAACCATACAGAATAGAGCTTGTTGGAGTAGTATGTGATGCTTACCTTGCTGTCATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAACTGACATCGCACAAGAGATTTGCTGATGCATTTCTGACTTATTGTCAGCTAGTTGACAATGCTAGGCTATACAGTACAAATTCTTTGGAAGGTCCACCTAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGCTCGTTGATCCAGATGAAATAGACTGTTTGAAGAGGGTGGCAACGTTGAACGAAAGTGCCAACAACATATATGAACTTTACAAGCGCCCCAACCCAGCTTGTGAAGTTGGATCCATATGGAAAGACATTGTGCTATCTCCTTCAAGGTTGAACGTCCAAAAAGAGCTGAAGTATTCAATCCAAAAGATTGAGAGTTTAAGACTATAG 1602 0.4307 MRLSYLVLLLMFTEYNGKPTFTQIVVASSIGLIFAAAMHYRLKKMRDRKTIPRLRISKANRTPKLEKFPHYVARQMGFKDRRCCPHLCKLASEYIRKSEGCENDLYAFFENEPDADSLFVKLVEEFERCILSYFAFHWRHGDILISQVSTSVKNSFLCCLELQVFSSEIEPRAKLRHIVMAATREQRIDRVTKNLKVARVFNTLVEEMKAMGLTNDDSQCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYRALSARGHQDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWLPFVVQTITMARNVHRRRYRMGPGYKMNGDGTVTENYWQRIDEEQDRVEGKRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLTSHKRFADAFLTYCQLVDNARLYSTNSLEGPPKLIGWKDRDKTLLVDPDEIDCLKRVATLNESANNIYELYKRPNPACEVGSIWKDIVLSPSRLNVQKELKYSIQKIESLRL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01816 533 Pfam Zeta toxin 228 340 IPR010488 GO:0005524|GO:0016301
Vian3g01816 533 PANTHER UNCHARACTERIZED 14 531 IPR044802 -
Vian3g01816 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 364 IPR027417 -
Vian3g01816 533 Gene3D - 217 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01816 Vian-Chr3 20792238 20796404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01816 - - pvu:PHAVU_007G178200g 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01816 3 20792238 20796404 Vian3g01816 3 20792238 20796404 ECH
Vian2g02171 2 41636690 41640469 Vian3g01816 3 20792238 20796404 PCT