Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01814 ATGTCTGGAGAAGTTTTTGACGGACAAGATGCTGGCTATGTGCCTGAGAACCCTGAGTTTCCACAAAATCATTCTGAGGAACATGATGGAGGAAATGTGATTGATGACTCAGGGTTTCCGCAACTGCAGCCCGATGAACATGATGAGGCCAATTTGGCCGTGGATGCTGATGTTCCGGAAAATAATTTTGATGGGAATGATGGAGAAGGTTTGCCTGAAAACCCTGATTTTCCTCCTCAAGAAAATGCTGAGGAACAGCATGTTGAAGGAGACATGACTGAGAATTTAGGCTCTGAGGAGAAACAGGAATCTCAGGAGGAGTTGAAAGGAGGTGAAGTAAAAAAATGGCCAGGGTGGCCTGGGGAAAATGTTTTCAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGTCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCCCCTGGAACTGCGGAAAGAGCTGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCACCATACCACCTGCTGTGGATGGTTTGTTAAGAGTTCATAAACAGGTTGTCAACGTAGAGCCTCATCCTGCTGATGGTGCATCAGGTGCAGGACGCACAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGGAGCTTAATTGGGAAACAGGGAGCCACTATAAAATCCTTTCAAGATTCCACAGGTTGCAACATACGTGTTCTTGGTTCAGAACACCTCCCAGTGTTTGCCCTGCGAGATGATAGTGTTGTCGAAATACAAGGAGAATCCTCTGGGGTTCACAAGGCAGTTGAACTTGTTGCAGTTCATCTACGGAAATTCTTGGTTGACCGCAGCATAGTTGGTGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGGGCTAACCAGAATGTGCCACATGGCCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGTTAGTGGTGGTGGACCTGCTTTCCCACCCAATCCTCAGTATATGCCCCCTTCGCATAACTATGATAATTACTACCCACCTGCTGATCTGCCTCCCATGGACAAGCACCTACATCAGGGTCCTCCACCTGCCTATGGAAGAGATGCTTCCATGGGAATTCATCCATCCAGTGCGCAACCGCCACAATCTGTTGTGACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCCTATGCAGATGCTGTTATTGGAGCATCAGGGACAAACATCAGCTACATCCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCTGGGGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAACTGGTGCAGAATTTCATGGCTGAAGCTGCCAGTGCAACTCAGGAACATATGGGAGGATCAATGAACCAAGGTTACAATTCCTATCCTACCAGTGCTCCTGTCTACCCATCTCCGCCCTCAAGCGCTGCTGGTCATGCAGGCCACGTACCTTCCGCAGATTATGGACCCGTTTATGGCACCAATTATGGCTATTGA 1584 0.4779 MSGEVFDGQDAGYVPENPEFPQNHSEEHDGGNVIDDSGFPQLQPDEHDEANLAVDADVPENNFDGNDGEGLPENPDFPPQENAEEQHVEGDMTENLGSEEKQESQEELKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRTIPPAVDGLLRVHKQVVNVEPHPADGASGAGRTVVTRLLVADTQAGSLIGKQGATIKSFQDSTGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAVHLRKFLVDRSIVGVFETQMQRPDVRANQNVPHGPPHQPWGPPQGFPAPGPVSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYGRDASMGIHPSSAQPPQSVVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQEHMGGSMNQGYNSYPTSAPVYPSPPSSAAGHAGHVPSADYGPVYGTNYGY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01814 527 CDD KH-I_PEPPER_like_rpt3 401 469 - -
Vian3g01814 527 MobiDBLite consensus disorder prediction 1 116 - -
Vian3g01814 527 MobiDBLite consensus disorder prediction 80 113 - -
Vian3g01814 527 Gene3D - 122 291 - -
Vian3g01814 527 Coils Coil 458 478 - -
Vian3g01814 527 CDD KH-I_PEPPER_rpt1_like 122 190 - -
Vian3g01814 527 SMART kh_6 212 287 IPR004087 GO:0003676
Vian3g01814 527 SMART kh_6 400 470 IPR004087 GO:0003676
Vian3g01814 527 SMART kh_6 121 194 IPR004087 GO:0003676
Vian3g01814 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 177 IPR036612 GO:0003723
Vian3g01814 527 Gene3D K Homology domain, type 1 390 477 IPR036612 GO:0003723
Vian3g01814 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 207 295 IPR036612 GO:0003723
Vian3g01814 527 MobiDBLite consensus disorder prediction 318 350 - -
Vian3g01814 527 CDD KH-I_PEPPER_rpt2_like 215 287 - -
Vian3g01814 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 114 492 - -
Vian3g01814 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 472 IPR036612 GO:0003723
Vian3g01814 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Vian3g01814 527 ProSiteProfiles Type-1 KH domain profile. 213 282 - -
Vian3g01814 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Vian3g01814 527 Pfam KH domain 216 282 IPR004088 GO:0003723
Vian3g01814 527 Pfam KH domain 125 177 IPR004088 GO:0003723
Vian3g01814 527 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
Vian3g01814 527 MobiDBLite consensus disorder prediction 307 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01814 Vian-Chr3 20750640 20755520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01814 K21444 - gmx:100818363 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02172 2 41646300 41650347 Vian3g01814 3 20750640 20755520 PCT