Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02172 ATGGCCGAGCATGGTTTTGATGGTCACGATGAAGGATATGTGCCCGAGGACCCTAATTTTCCTCATAATCACTCCGATGAACATGATGTAGGGACTGTTATTGATGGCTCTGGATTTCCTCATCTTCTGCCTGATGAACATGATGCAGTCGATTTGGTGGAGGATGCCGATTTTCCTCAAAATCATTTTGATGAACATGAACATGAACATGATGCTGGAGGTTTGCCTGGGGACACGGACTCTCCTCAGCAGGAGCATGTTGAGGAAGACCATGGTGCTGGAGAAATGTCTGAGAATTTTGATTCTTCGCCGATAGAGGGATCCGAGGCTGATTTGAAAGGGATTGAAATAAAAAAGTGGCCGGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTCGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAGATCACAGAAGAGACTAAAGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGGCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGATCGTGACCTTGCAGATAGCGCTTTGGCTGCTGGACGATCAGTTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGTTCTGGTTGCACCATACGAGTTCTTGGTTCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAATTGAACTTATTGCAGTACATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTCGAGACACAGATGCAAATATCAGATGTCAGAGCTAACCAGAATGGACCACCACATCAAAATTGGGGTCCTCCTCCGCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGGCCTGCTTTTGCACCCAATCAACAGTATATGCCACCGACACATCACTATGATAGTTATTACCCACCCACTGAGTTGCCTCCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGTCTATGCAAGGGATGCTTCTGTTGGAATTCATTCATCAAGTGCGCAACCACAACAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATTGGAGCGTCCGGCACTAATATCAGCTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTTCCAGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGTCACAGGATCCTCTGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTACGCATCTCCCCCGTCTAGCACTGGTGCTCATACAGGCCACGTGCCTTCTGCAGATTATGGACCCGTATATGGCACCAATTATGGGTATTGA 1590 0.4673 MAEHGFDGHDEGYVPEDPNFPHNHSDEHDVGTVIDGSGFPHLLPDEHDAVDLVEDADFPQNHFDEHEHEHDAGGLPGDTDSPQQEHVEEDHGAGEMSENFDSSPIEGSEADLKGIEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQMQISDVRANQNGPPHQNWGPPPQGFPAPAGGGGGGPAFAPNQQYMPPTHHYDSYYPPTELPPMDKHLHQGPPPVYARDASVGIHSSSAQPQQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANASQDPLGGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02172 529 SMART kh_6 402 472 IPR004087 GO:0003676
Vian2g02172 529 SMART kh_6 216 291 IPR004087 GO:0003676
Vian2g02172 529 SMART kh_6 125 198 IPR004087 GO:0003676
Vian2g02172 529 MobiDBLite consensus disorder prediction 64 104 - -
Vian2g02172 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 214 300 IPR036612 GO:0003723
Vian2g02172 529 Pfam KH domain 129 181 IPR004088 GO:0003723
Vian2g02172 529 Pfam KH domain 405 468 IPR004088 GO:0003723
Vian2g02172 529 Pfam KH domain 220 286 IPR004088 GO:0003723
Vian2g02172 529 MobiDBLite consensus disorder prediction 317 339 - -
Vian2g02172 529 CDD KH-I_PEPPER_rpt1_like 126 194 - -
Vian2g02172 529 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 119 489 - -
Vian2g02172 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 394 474 IPR036612 GO:0003723
Vian2g02172 529 MobiDBLite consensus disorder prediction 82 96 - -
Vian2g02172 529 ProSiteProfiles Type-1 KH domain profile. 217 286 - -
Vian2g02172 529 CDD KH-I_PEPPER_like_rpt3 403 471 - -
Vian2g02172 529 CDD KH-I_PEPPER_rpt2_like 219 291 - -
Vian2g02172 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 121 180 IPR036612 GO:0003723
Vian2g02172 529 Coils Coil 460 480 - -
Vian2g02172 529 Gene3D K Homology domain, type 1 390 479 IPR036612 GO:0003723
Vian2g02172 529 ProSiteProfiles Type-1 KH domain profile. 403 467 - -
Vian2g02172 529 MobiDBLite consensus disorder prediction 1 28 - -
Vian2g02172 529 Gene3D - 126 295 - -
Vian2g02172 529 ProSiteProfiles Type-1 KH domain profile. 126 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02172 Vian-Chr2 41646300 41650347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02172 K21444 - gmx:100799901 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02172 2 41646300 41650347 Vian3g01814 3 20750640 20755520 PCT