Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01740 ATGTCCGGCGGCAAGGTGAAGGGCATTCTTAAAGGCTTTAGATACTTTACTCAAATATTTGAGAGTGAAAAAGAACAAGAAATTCAGATCGGACTTCCCACAGATGTAAAGCACGTGGCTCATATAGGGTGGGATGGACCCTCCGTAAATTCTCCCAGCTGGATGAACGAGTTTAAAACTTCTCCTACTGTAGATCTCCACAATAAAGGTCTAGAAAATGGAGTCAAACGAGTTGCCGAAGAATCAACGAGAAAAAATCTTCGAGGGTCATCAGATTTACCCAAGCCATCTAAAAGACAGTCAACGGGTGTTACGGATTCTCCGACAAGGGAAAAGACAAGCAAACCGCGAACGAGGAAAACGTCGCACCACAAGAACAAAGATGAGGTCGCCCACTCACCCCGAATACCCGAATACCCGGATCCATTTCAACTACCTCCTCAACCCGTACCCTCACCCGATAATAATATTCCTAAAAAGTCTCGTCGCCATAAGACAAAGGAGCATTCTGGTGGCGTCCCATCCAAATTGAGAACCAAAGCCCATTCTCCTTCGGATCCTGGATCCCCGGCCCAACCCCAACCCAAGTCTAGGAACACCCACACCACCTTTGATGAAACTGAACACGATCTTTTGCTCTAA 642 0.4657 MSGGKVKGILKGFRYFTQIFESEKEQEIQIGLPTDVKHVAHIGWDGPSVNSPSWMNEFKTSPTVDLHNKGLENGVKRVAEESTRKNLRGSSDLPKPSKRQSTGVTDSPTREKTSKPRTRKTSHHKNKDEVAHSPRIPEYPDPFQLPPQPVPSPDNNIPKKSRRHKTKEHSGGVPSKLRTKAHSPSDPGSPAQPQPKSRNTHTTFDETEHDLLL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01740 213 MobiDBLite consensus disorder prediction 93 109 - -
Vian3g01740 213 Pfam P21-Rho-binding domain 29 74 IPR000095 -
Vian3g01740 213 FunFam Elongation factor Ts, mitochondrial 23 67 - -
Vian3g01740 213 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 5 187 IPR044510 -
Vian3g01740 213 CDD CRIB 28 61 - -
Vian3g01740 213 MobiDBLite consensus disorder prediction 76 92 - -
Vian3g01740 213 MobiDBLite consensus disorder prediction 76 213 - -
Vian3g01740 213 Gene3D CRIB domain 23 65 IPR036936 -
Vian3g01740 213 ProSiteProfiles CRIB domain profile. 30 43 IPR000095 -
Vian3g01740 213 MobiDBLite consensus disorder prediction 139 154 - -
Vian3g01740 213 SMART PBD_5 30 61 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01740 Vian-Chr3 19709551 19710451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01740 - - vun:114192631 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01740 3 19709551 19710451 Vian3g01740 3 19709551 19710451 ECH
Vian2g02220 2 42297655 42298928 Vian3g01740 3 19709551 19710451 PCT