Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01709 ATGAAACGCATGGAAATCTTCTGTGCGTCTGAAGCCTCAACAGCCATATGCCTCAGCACGGATCAAGCCTCATGTTCATCTTCTTCCAACACCATTCTGCTTGGAGGCAGAGTCATTGACCGCCACAACCCCATTATCAATGACTCAAGAAGGAGCACTTCCAAATCTCTCACTGCCCCATGTTCCTCTTCTCACTCACCCATCAACCCCAAGCCTTACCATGAGCTCCACAAGCCCAACAAAAACTCTTGTTCCAAAACTCCAACCAAGGAACATCAAAATCACAAGAACAAAAACACCACCCAACATCTCACCAACACTTCTAAACCAGTGACTTCGCTTAAGCCACCTTCTGCTTCAATCACTCCTCATGCTTCAACTAGATCTTTGCTCGCTGCCTCCTCCTTATTGGATTCTTCTTCACATTATGATCCTGTTTTTCAAGATGAAAACATTCCTGTTTCTAAACTTTCTAGCTCTTCCCATCCAAAATCTTGTTCCTCAGACCAGGTTGTGGTATTGAGAGTATCTCTGCATTGCAAAGGCTGTGAAGGGAAAGTGAGGAAACATCTCTCCAGAATGCAAGGAGTTACTTCCTTCGACATAGATTTTGCTGCAAAGAAGGTGACAGTTGTTGGGGATGTGACTCCATTGAGTGTCTTGGCTAGCATATCGAAGGTGAAAAATGCACAATTATGGCCAGCAACTGCATCAGCTACTGTTGAAACTAAGTAA 735 0.4435 MKRMEIFCASEASTAICLSTDQASCSSSSNTILLGGRVIDRHNPIINDSRRSTSKSLTAPCSSSHSPINPKPYHELHKPNKNSCSKTPTKEHQNHKNKNTTQHLTNTSKPVTSLKPPSASITPHASTRSLLAASSLLDSSSHYDPVFQDENIPVSKLSSSSHPKSCSSDQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFDIDFAAKKVTVVGDVTPLSVLASISKVKNAQLWPATASATVETK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01709 244 CDD HMA 173 226 IPR006121 GO:0046872
Vian3g01709 244 ProSiteProfiles Heavy-metal-associated domain profile. 169 235 IPR006121 GO:0046872
Vian3g01709 244 Pfam Heavy-metal-associated domain 174 226 IPR006121 GO:0046872
Vian3g01709 244 MobiDBLite consensus disorder prediction 99 124 - -
Vian3g01709 244 MobiDBLite consensus disorder prediction 49 69 - -
Vian3g01709 244 SUPERFAMILY HMA, heavy metal-associated domain 170 227 IPR036163 GO:0046872
Vian3g01709 244 MobiDBLite consensus disorder prediction 44 124 - -
Vian3g01709 244 Gene3D - 167 231 - -
Vian3g01709 244 MobiDBLite consensus disorder prediction 71 98 - -
Vian3g01709 244 PANTHER OS08G0405700 PROTEIN 4 240 IPR044526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01709 Vian-Chr3 19191704 19192737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01709 - - pvu:PHAVU_007G159600g 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01709 3 19191704 19192737 Vian3g01709 3 19191704 19192737 ECH
Vian2g02300 2 43367638 43369301 Vian3g01709 3 19191704 19192737 PCT