Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02300 ATGAAAGGCATAGACATCTTCTGTGCATCACAGGCCTCAACAGCCATATGTCTTAGCATGGATGAACCCTCTTCCTCCATTTCCAACACTACTCAATTAGGTGGCAGAGCCATTGACCGCCACAACCCCATCATCACAGATCCAAGAAGAACACCCTCCAGAGACTTCATTGTCCCTAGTTCTTCTCCTAAACCTTTGCATGATCATCTCCCCAAGCCTAAGAAAAACTCCACTTCCAAGCCAAGTGGCCAGAAAAAGAAAAATCCAGCAAAGGGTCTTGATCAAAAGAAGAAAAGTAGTGTGGAAAAGTTGACCGAACACATCACAAACAATTACTCTTCAAAACCAATTGATAGTATTCTGAGGAGGAGTTGGGTTAGGCCACCTACTGATTTGATCACCCCTCCTGGTTCTTCAAGATATTTGCTCGGTGACATGCCTTCCTTCCATGGTGGATCATCACTTTATGATCCTGTTTTGGCTTTAACTAACGTTGACAAGGACAAAGCTCAGGTCCTTCATCATGATGAAACGACCCATTCATCTAAACCCTCTTCTAGCTCCTCTCTTCCAAAATCTGCTTCCTCAGACCAGGTTGTAGTTTTGAGGGTTTCTCTGCACTGCAAAGGTTGTGAAGGGAAGGTGAGGAAACATCTCTCCAGAATGCGAGGAGTAACATCCTTCAACATAGACTTTGCGGCAAAGAAGGTTACAGTGGTTGGTGATGTGACTCCTTTGAGCGTATTGGCAAGCATATCAAAGGTGAAGAATGCACAATTTTGGCCAGAACCTGCTTCAGTAGTTGGATCCGGTTATGCAGAAACCAAGAAAACAAATTTTATCTAA 846 0.4385 MKGIDIFCASQASTAICLSMDEPSSSISNTTQLGGRAIDRHNPIITDPRRTPSRDFIVPSSSPKPLHDHLPKPKKNSTSKPSGQKKKNPAKGLDQKKKSSVEKLTEHITNNYSSKPIDSILRRSWVRPPTDLITPPGSSRYLLGDMPSFHGGSSLYDPVLALTNVDKDKAQVLHHDETTHSSKPSSSSSLPKSASSDQVVVLRVSLHCKGCEGKVRKHLSRMRGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPEPASVVGSGYAETKKTNFI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02300 281 SUPERFAMILY HMA, heavy metal-associated domain 198 255 IPR036163 GO:0046872
Vian2g02300 281 CDD HMA 201 254 IPR006121 GO:0046872
Vian2g02300 281 ProSiteProfiles Heavy-metal-associated domain profile. 197 263 IPR006121 GO:0046872
Vian2g02300 281 MobiDBLite consensus disorder prediction 174 194 - -
Vian2g02300 281 MobiDBLite consensus disorder prediction 87 101 - -
Vian2g02300 281 MobiDBLite consensus disorder prediction 22 101 - -
Vian2g02300 281 Gene3D - 195 259 - -
Vian2g02300 281 PANTHER OS08G0405700 PROTEIN 6 266 IPR044526 -
Vian2g02300 281 MobiDBLite consensus disorder prediction 22 36 - -
Vian2g02300 281 Pfam Heavy-metal-associated domain 202 254 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02300 Vian-Chr2 43367638 43369301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02300 - - gmx:100810015 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02300 2 43367638 43369301 Vian3g01709 3 19191704 19192737 PCT