Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01701 ATGAATGTGGTAGGAAAAGTTGGAAGCTTGATATCTCAAGGTGTGTACTCAGTTGCAACCCCTTTTCACCCCTTTGGTGGAGCTGTTGATGTGATTGTTGTTCAGCAACAAGATGGGACATTTCGGAGTACGCCTTGGTATGTTCGGTTTGGTAAATTTCAGGGTGTTCTCAAAGGTGCGGAAAAGTATGTTAAGATAAATGTTAATGGTGTTGAGGCCAATTTTCATATGTGTCTTGACAACTCAGGGGAGGCTTATTTCTTGAAGGAGGTGGATGATGATAAAGTGATCGATTCAATTGAGGTTGTTCAAGATTCCATTGACAAAAAGAATGGCTATTTTGGTAATGTTCATAGACTTGATCATAGCATCTCGGATTCTGGGGTTCTGAAGTTGAAAGAACAGTGCGATTCCTTAGTTGTGCATGCGCCTCAAATTCAAAGGTCAGAATCTGATGTTGATAGAAGATTTTACGAATTCCCAGATGATCGATCTTCTTTAGAAGATTCAGTTGAGTTGTCAGAATACGACTCTAATTCATTCGGGAGCCTAGAGGGAGACAATTTTGCAGAGTCACAGGGTGCACATCCAGAGATGGTCTTGGTGAGTGTTGATGGTCATATATTAATGGCCCCTATCTCAGAAACAGAGCAAACTGAGGAGAATGTGCACTTAAAAACTCCTCAATTTCACCTGGGACCAGGTGAAGAGACTGACTTATGTGAAGGCAATGGAGAGATTGGTGAAAATGCTTGGGCTACTGATTATATTAGTCAGCTAGATGCTCAAACAACTAATGTCCATCCTAGATGTTGTAACATTAATGGTGACGATAATACTTTTAAGCACTTACACGAAGTTTGTCAAAGAGAGGAGGCACATATTAGTCAGACACAGGAAAACTTAGAGATTAAAAATCCGGAGGTGAAAACTGATTCAGAAGTGGCTGCATCTGGTATCAATAGGGAGAATGTTTTCAAAAGCTGTTTGGAGCTGCAACATTTTGGTCAGCAGGCTGGAAATGCTGCCGATTTACAAGATACAGGTTCTCCATTGGGGATTCAAAATTCAGCAGATCAATCTAATGGAAGTTGTTTTGTAGTTAATGAAGATGAACAAGGGAGGATTGTGCAACCTAAAAGCGGCAATGAGTTATCACCTCCTGGTTGTTGTATTTCTTCTAATGGTTATGGATATCCAAAATCAGAATTGGAAATTCAAGAGGTTGAGAAAAATGCATCTGGAGAAATTGAAATGGATCCTGGCTATCGTTCAGTTACTACCGAAACAGAACAGAATAATGAACATGTTGTCAAGTCAGTGACAAATAATACGGGAGATGAGAGTCAACAAGCCCCTTCACTCAAAGATGTCAGGGTTACATGTGAGGTAGTCGAACCTCAAACAGAAACTTCAAATAAAGGGGATCAAAGCCACTTGGGTTTGGGATTTGAGATTTCACTTTGTGGTCATGAACTTAAGCTGGGGATGGGTTCAGTAGCTGCTGCTGAAGTGTTTGAAGCACATCGCATATCTTCAGTTGACTTCACAAGTTCTGCTCCTTCAATAATTAAAAATCCAAATCTTATTATCAAGTTTAAAGAGAGGTACATGACGTGGGAAAAGGCTTCTCCTCTTGTCCTTGGAATGGCTGTTTATGGTTTAGATTTGCCTGTTGAGCCCAAAGATACGGTTCCTGTGGAACAGGATCAAGCATTGAAGTCTAGGGATAATGATCTAGGATCATCTTCGGCTGGGCGCAGATGGAGACTGTGGCCTATTCCTTTCCGAAAGGTCAAAACATTTGACCATACTAATAGCAATACATCAAATGAGGAGGTGTTTCTTGATTCTGAGTCTGGATCTTTTGCAGACCAAACTCCAACATCCAGTACCCAGGGATCTCCTGGAAAGCAATTTCTAAGAACAAATGTTCCCACTAATGATCAGATAGCATCCTTAAACCTCAAAGATGGTCAAAATTTGGTAACATTCAGTTTCTCTACAAGGGTTCTCGGTACACAACAGGTTGATGCTCATATCTATTTATGGAAGTGGAATGCAAGAATTGTTATTTCAGACGTTGATGGAACTATTACCAAGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACGCAATCTGGAGTGGCCAGGCTTTTCTGTGCCATTAAGGAAAATGGATACCAGCTACTTTTTCTGAGTGCCCGTGCCATTGTCCAGGCATATCTAACTAGAAATTTCTTGTTCAACCTGAAACAGGATGGAAAAACATTACCAAATGGACCTGTTGTTATCTCACCTGATGGATTATTTCCCTCACTTTACCGAGAAGTGATACGAAGGGCACCGCATGAATTCAAGATTGCTTGTTTAGAGGATATCAAAAAGCTTTTCCCTTCTGACTATAACCCATTCTACGCCGGATTTGGAAATAGAGATACAGATGAGCTGAGTTACAGAAAGATTGGCATCCCGAAGGGCAAAATATTTATTATTAACCCCAAGGGTGAGGTAGCTATTAGTCACCGAATTGGTGCAAAGTCATATACATCATTACACACCCTTGTGAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAGGAGGACTACAACTCATGGAACTATTGGAAAACCCCATTGCCAGATTTAGATTAG 2673 0.4082 MNVVGKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKYVKINVNGVEANFHMCLDNSGEAYFLKEVDDDKVIDSIEVVQDSIDKKNGYFGNVHRLDHSISDSGVLKLKEQCDSLVVHAPQIQRSESDVDRRFYEFPDDRSSLEDSVELSEYDSNSFGSLEGDNFAESQGAHPEMVLVSVDGHILMAPISETEQTEENVHLKTPQFHLGPGEETDLCEGNGEIGENAWATDYISQLDAQTTNVHPRCCNINGDDNTFKHLHEVCQREEAHISQTQENLEIKNPEVKTDSEVAASGINRENVFKSCLELQHFGQQAGNAADLQDTGSPLGIQNSADQSNGSCFVVNEDEQGRIVQPKSGNELSPPGCCISSNGYGYPKSELEIQEVEKNASGEIEMDPGYRSVTTETEQNNEHVVKSVTNNTGDESQQAPSLKDVRVTCEVVEPQTETSNKGDQSHLGLGFEISLCGHELKLGMGSVAAAEVFEAHRISSVDFTSSAPSIIKNPNLIIKFKERYMTWEKASPLVLGMAVYGLDLPVEPKDTVPVEQDQALKSRDNDLGSSSAGRRWRLWPIPFRKVKTFDHTNSNTSNEEVFLDSESGSFADQTPTSSTQGSPGKQFLRTNVPTNDQIASLNLKDGQNLVTFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVARLFCAIKENGYQLLFLSARAIVQAYLTRNFLFNLKQDGKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIGAKSYTSLHTLVNDMFPPTSLVEQEDYNSWNYWKTPLPDLD 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01701 890 PANTHER LIPIN 1 890 IPR026058 -
Vian3g01701 890 Pfam LNS2 (Lipin/Ned1/Smp2) 644 866 IPR013209 -
Vian3g01701 890 SUPERFAMILY HAD-like 682 832 IPR036412 -
Vian3g01701 890 SMART lns2 690 846 IPR031315 -
Vian3g01701 890 Pfam lipin, N-terminal conserved region 1 96 IPR007651 -
Vian3g01701 890 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 484 590 IPR031703 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01701 Vian-Chr3 19052430 19063739 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01701 K15728 - gmx:100795884 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01701 3 19052430 19063739 Vian3g01701 3 19052430 19063739 ECH
Vian2g02305 2 43447648 43454371 Vian3g01701 3 19052430 19063739 PCT