Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01608 ATGAGAAATAAAAAGGAGAACCTAATCCAGTGTCGGAAAAACAAAGAAATTCAGAGGTCCGAAATAGGCTACGTCTCTTGGGAAGGCTTTTCCACCTTCTTTATCCGTTTCTCTCCAAATATCACACTCCGCCATGGTGGCAAGGAAACAGCACCTGCGTTTCCTCTGCACAATGATCACGCTGCAACCTTCTTCTGCTACCAACTCACCACTCTAATGTACTATGCTGTTCTTCTCGTTCCTATGGAGTTCGCAAGGACTATGTTCTGTTCGTCTCCACCGTTTCCTTCAAGAACTCACCCTTGGAACACTCACTCTCCGTCCTCTTCTACTTCCGTTTTGATGCTTCGTGAACAAGCTTCCTCTGCAGTTGCCTCTTGGTCCTCTAATTTTTCAGCCCAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTTCACATGTCTAAGGAAGACAAAACATCTCAGGCAATTTTAAATACAAGGCAGATGGATATGGACGCGGTTCATGAAGAGAATAACACTGGAAATGCTGACCAGGTAGTGCTGGACTTTAGGAAGCACCTGCATCTCTGGCCTCGTTTACAGAACTTATTAACTTCCTCCCAAACAGGAGAAATTGCTGCTTCTTCAACTCTACAGCATATTTCTGTTGACTCGGACAGACGGACAGATAGTGTGCAATGTAATGGAGTTTCTCTTGCTAAAAAAGCTTTGTCTACTGCAAAACAAGCATCCTTAGTTGTTGAAGGCCTGAAATCAACTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCTTCCACTAGTTTGGCGGACCCATCAATTGGAAGAAATAAAACTGTGAGGTCAACTCGGCTTTTAGAGAGACGAGCAAAACAAAGAAAAGTACCTAAGTCCGTAGTTAAAGATGATGAAGCCTACGATACAAGAAAGGATGATTCTCAAGAAAGGCTACGCAAAGAAAAGAATATAAATGAAGAATTTGATCACAATGATACCCTACGCATGTTCTTGAGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTGAACTGATTTCTCAGATACAGGACTTATTGAAATTGGAAGAATTGAAGACCAGACTCCAATCTCAATTTGGTAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGCGGGACTTAACTCTCGAAAGCTCCATGCTCAGCTTCATCATGGAAACAAAAGCAGAGAAAAGTTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGTAGTATGGGCCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCCGGTTCCCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAAGCGGTGTTTAGACATTCCAGGACAATCCGTCTGCCGGAGAAGGTATATATCCAATTGGGCAAGGTAATGGAAGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGATTGACAAATTACTATATTCTGCAAGAACTCCAATTTCTATGCAGAAAACTGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCAGATCCCACAGTTGAGGCCACAGACTTGAGTGTTGAAAAACAGCTTATGAGGCGGCATGTGCTCAATGTCCTAACTATCTTGCGCCCCAAAGAAAGGAAAATAATCCGACTAAGATATGGTTTTGAAGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCATTATATAAGCTTAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTTTATAA 1965 0.4188 MRNKKENLIQCRKNKEIQRSEIGYVSWEGFSTFFIRFSPNITLRHGGKETAPAFPLHNDHAATFFCYQLTTLMYYAVLLVPMEFARTMFCSSPPFPSRTHPWNTHSPSSSTSVLMLREQASSAVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDAVHEENNTGNADQVVLDFRKHLHLWPRLQNLLTSSQTGEIAASSTLQHISVDSDRRTDSVQCNGVSLAKKALSTAKQASLVVEGLKSTKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRAKQRKVPKSVVKDDEAYDTRKDDSQERLRKEKNINEEFDHNDTLRMFLRGPETKQLLTLEQESELISQIQDLLKLEELKTRLQSQFGREPTMAEWAEGAGLNSRKLHAQLHHGNKSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYSARTPISMQKTVWADQDTTFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01608 654 Pfam Sigma-70 region 2 418 487 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 491 564 IPR013324 -
Vian3g01608 654 Gene3D - 335 487 - -
Vian3g01608 654 PIRSF Sigma_factor_SigC 81 654 IPR016262 -
Vian3g01608 654 CDD Sigma70_r4 580 638 - -
Vian3g01608 654 MobiDBLite consensus disorder prediction 301 330 - -
Vian3g01608 654 Pfam Sigma-70, region 4 587 639 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 338 488 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 Gene3D - 491 568 IPR036388 -
Vian3g01608 654 ProSitePatterns Sigma-70 factors family signature 1. 442 455 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 MobiDBLite consensus disorder prediction 300 330 - -
Vian3g01608 654 NCBIfam sigma-70 family RNA polymerase sigma factor 414 641 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 ProSitePatterns Sigma-70 factors family signature 2. 611 637 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PRINTS Major sigma-70 factor signature 590 602 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PRINTS Major sigma-70 factor signature 466 474 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PRINTS Major sigma-70 factor signature 626 637 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PRINTS Major sigma-70 factor signature 611 626 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PRINTS Major sigma-70 factor signature 442 455 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 Pfam Sigma-70 region 3 499 567 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vian3g01608 654 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 233 650 - -
Vian3g01608 654 Gene3D - 573 653 IPR036388 -
Vian3g01608 654 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 551 650 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01608 Vian-Chr3 17704346 17709774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01608 - - vum:124824753 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01608 3 17704346 17709774 Vian3g01608 3 17704346 17709774 ECH
Vian2g02372 2 44134125 44139069 Vian3g01608 3 17704346 17709774 PCT