Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02372 ATGCCAAAGGCACCAAGATATGCTGCATTTGGTAATATTTCTCATAAATTTAAGTTGAAGAATAATGAAGGTGCAGTGATGATGGAGGAAGGAAGTAAAAGCCCTTCAGGAATTAAAAATTGGGCTTCGGCGGAAACTATGGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCTTCTAGTTCTACAGCTCGGCATTTTCCTACCTCTGTTCTCTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGCGTATAATAAGGAGGCAACGTTAAATACAAGGCAGATGGATATGTCCTCAGTTCAAGAGAAATGCAACACAGGAAATCCTGATCAGTTAGTGCATGATTTTGTTCACCAGTTGCATCTCCGGTCTCATTTACAGAACATACTGACTTGTTATCCTACTAGGGAAATTGCTGCTTCTTTGACTCTTCAGCCTGTTGATAACGATTCAGAGAGGCCTGCAGATGGTCTGCCAAGGAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCGGCTTCATCAGTTGGAGTTGATGATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGCTGACTCTTCACTGAAAAGGAATAAAATTGTGAGATCAACACGGATTATAGAAAGACGATCTAAACAGAGAAAAGCATCAAAGTCAAATCTTCTTGACGAAGAAAGTTACCTTGACAGAAAATCTTTTGTACAGAGAAAGCTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAATGACCCCCTGCGCATGTTCTTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTCTCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGACGGGAACCAACTTTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGTTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATATGCGCATGGTAGTTCACATTGCTAAATATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGACAAATTTAAACCAGGAGCTGGTTGCCGATTTGGTACTTACGCATACTGGTGGATAAGGCATTCAATAAGGAAGGCGATATTTCTGCATTCCAGGACTATCCGTATACCGGAGAATTTGTATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATTCATTCAGGAGGGAAACATTAACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAATAGACAAGTTGGAAACTTTACTATTTGCTTCAAGAAATCCAATTTCCATGCAGCAAACTGTGTGGGCGGACCAAGAGACAACTTTCCAGGAGATTACTGCAGACTCAGCAATCGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGCATGTGCACAACCTCCTAAGTATGTTAAGCCCTAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAAGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTTTTTGGTTTGACCAAGGAAAGGGTCCGACAGTTGGAGACCCGAGCATTGTCCAAGCTCAAGGAGTGTCTTGAAAGTGAAGGACTTGACGCATACATAGACTTGCTTATATAG 1746 0.421 MPKAPRYAAFGNISHKFKLKNNEGAVMMEEGSKSPSGIKNWASAETMVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHAYNKEATLNTRQMDMSSVQEKCNTGNPDQLVHDFVHQLHLRSHLQNILTCYPTREIAASLTLQPVDNDSERPADGLPRNAVSLAQQALSASKQAASSVGVDDDDDPLSFGLASTSLADSSLKRNKIVRSTRIIERRSKQRKASKSNLLDEESYLDRKSFVQRKLRLEKKLNEGFDQNDPLRMFLSGPESRQLLTREEESQLITQLQDFSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCVNRSKEKLFHANMRMVVHIAKYYQGRGLSLQDLFQEGSTGLMKSIDKFKPGAGCRFGTYAYWWIRHSIRKAIFLHSRTIRIPENLYRLLGKVIEAKKSFIQEGNINPSKEELARRVGITIDKLETLLFASRNPISMQQTVWADQETTFQEITADSAIEIPDVCVSKQLMRRHVHNLLSMLSPKEKSIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLETRALSKLKECLESEGLDAYIDLLI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02372 581 Pfam Sigma-70, region 4 514 566 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 Pfam Sigma-70 region 2 345 409 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 ProSitePatterns Sigma-70 factors family signature 2. 538 564 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 Pfam Sigma-70 region 3 425 497 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 Gene3D - 501 580 IPR036388 -
Vian2g02372 581 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 418 491 IPR013324 -
Vian2g02372 581 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 478 577 IPR013324 -
Vian2g02372 581 Gene3D - 418 495 IPR036388 -
Vian2g02372 581 PRINTS Major sigma-70 factor signature 553 564 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 PRINTS Major sigma-70 factor signature 538 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 PRINTS Major sigma-70 factor signature 517 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 PRINTS Major sigma-70 factor signature 369 382 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 PRINTS Major sigma-70 factor signature 393 401 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 Gene3D - 207 414 - -
Vian2g02372 581 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 168 577 - -
Vian2g02372 581 NCBIfam sigma-70 family RNA polymerase sigma factor 343 568 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 265 415 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vian2g02372 581 CDD Sigma70_r4 507 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02372 Vian-Chr2 44134125 44139069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02372 - - gmx:100815699 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02372 2 44134125 44139069 Vian2g02372 2 44134125 44139069 ECH
Vian2g02372 2 44134125 44139069 Vian3g01608 3 17704346 17709774 PCT