Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01602 ATGGCCGTGACCACTCCCTATCTCAATGCCACAGAAAAAAAGCACTGGTGGCTCACCAACCGTAAGGTTGTTGAGAAATACATCAGAGACGCTCGCACTCTGATGGCCACGCAGGAACAGAGCGAGATCGCTTCGGCGCTCAACCTTCTCGACGCGGCTCTGGCGATCTATCCGCGGCTCGACGAAGCGCTTGAGCTGCGAGCGAGGTCTCTGCTCTGTCTGCGGAGGTTCAAAGAGGTAGCGGATATGCTTCAAGACTACATCCCGAGCCTGAAAATGGCGAACGATGAGTCGGTTTCTTCGGATAGTTCTTCGCAACAACTTTCTAGGGAGGGCGCGAAGCTCCTCTCCTCTGATACCTCGGGTTCGGATCAGAGCTTCAAGTGCTTCTCTGTCTCTGACTTGAAGAAGAAGGTTATGGCAGGGCTGTGTAAAAGTTGCGACAAGGAAGGGTATTGGAGATACTTGGTTCTGGGGAAAGCATGCTGCCACCTAGGCCTAATGGAAGACGCAATGGTCCTTCTCCAGACGGGGAAACGCCTAGCTTCCGCCGCATTCCGCCGCGAGAGCGTGTGCTGGTCCGACGATAGCTTCTCCCTCTCGAACCCCCTCTTCTCCGGCGACTCAAGCCCACCCCGGGTCCCACTCCCGGAGTCTGAAGCAGTGACCCAACTCCTTGCCCACATAAAGCTCCTCCTCCGGCGCCGTGCCGCCGCGCTCGCTGCCCTGGAAGCCGGCCTCCACTCCGAGGCCATCCGCCACTTCTCCAAAATCGTGGACGGGCGACGTGGTGCCCCGCAGGCCTTCCTCGCCGAGTGCTACATGCACAGGGCCTCCGCTCACCGGTCCGCCGGCCGAATCGCCGATTCTATCGCCGATTGCAACAGAACCCTCGCCTTGGACCCCACCTGCATCCAAGCTCTGGAAACCCGAGCATCTCTTCTGGAATCCATTCGTTGCTTCCCTGATTCACTCCACGACCTCGAACACCTCAAACTCCTCTACAACACTATCTTGCGCGACCGCAAACTCGCCGGTCCTGCCTGGAAGCGCCAAAACGTGCGCCCCAGAGAAATTCCTGGGAAACTCTGCGCCCTCACGACGAAGATCCAGGAACTGAAACAGAGGGTAGCTTCGGGAGACACCTCCAACGTGGACTACCATGGTCTCATCGGCTTGCGGCGCGGTTGTGGTCGTTCGGAGTTGCAGAGAGCGCATTTACTTCTGTCTCTCAAACACAAGCCCGACAAGGCAATGTGCTTCATCGAGAGGTGCGAGCTGGCGGACGAGCGGGACCTCGATTCTGTTAAGGAGAGGGCGAGAATGTCGTCGCTCTTGCTCTACCGGCTGCTCCAGAAGGGTTACACCAACGTGATGGGTGCCATAATGGACGAGGAGGCTGCTGAGAAGCAAAGGAAGAAAAAGGTTATGGAAGCTCAGGCCAAAGTCGAGAACTTGGAAAACAAAAAGTGCACTGTTTCGTCTCCTTCCACCGCCAATCCCGCGGTTTTTCAGGGAGTATTTTGCCGCGATCTTGCAGTTGTTGGAAACTTGCTCTCGCAAACGGGATTCAACCGTTCCATTCCGGTCAAGTACGAGGCGTTGAGCTGCTGA 1614 0.5688 MAVTTPYLNATEKKHWWLTNRKVVEKYIRDARTLMATQEQSEIASALNLLDAALAIYPRLDEALELRARSLLCLRRFKEVADMLQDYIPSLKMANDESVSSDSSSQQLSREGAKLLSSDTSGSDQSFKCFSVSDLKKKVMAGLCKSCDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLSNPLFSGDSSPPRVPLPESEAVTQLLAHIKLLLRRRAAALAALEAGLHSEAIRHFSKIVDGRRGAPQAFLAECYMHRASAHRSAGRIADSIADCNRTLALDPTCIQALETRASLLESIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWKRQNVRPREIPGKLCALTTKIQELKQRVASGDTSNVDYHGLIGLRRGCGRSELQRAHLLLSLKHKPDKAMCFIERCELADERDLDSVKERARMSSLLLYRLLQKGYTNVMGAIMDEEAAEKQRKKKVMEAQAKVENLENKKCTVSSPSTANPAVFQGVFCRDLAVVGNLLSQTGFNRSIPVKYEALSC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01602 537 Coils Coil 469 489 - -
Vian3g01602 537 PANTHER OS01G0273500 PROTEIN 9 537 - -
Vian3g01602 537 SMART tpr_5 152 185 IPR019734 GO:0005515
Vian3g01602 537 SMART tpr_5 271 304 IPR019734 GO:0005515
Vian3g01602 537 SUPERFAMILY TPR-like 237 332 IPR011990 GO:0005515
Vian3g01602 537 Gene3D Tetratricopeptide repeat domain 35 495 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01602 Vian-Chr3 17595337 17597999 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01602 - - gmx:106797171 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01602 3 17595337 17597999 Vian3g01602 3 17595337 17597999 ECH
Vian2g02838 2 49265851 49268555 Vian3g01602 3 17595337 17597999 PCT