Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01568 ATGGTTGCTCCTTGTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCTGTGGGAGTTCCGACGATCGACCTTTCGTTGGAAAGGTCGAAGCTGTCGGAAACAGTGGTGAAAGCATGCGAAGAATATGGTTTCTTCAAGGTGGTGAACCACAGTGTGGCAAAGGAGGTGATTTCAAGATTGGAAGAGGAGGGAACGGCGTTTTTCTCCAAAACCACCTCCGAGAAGCGTCAAGCTGGCCCTGCCAATCCTTTCGGATATGGCTGCAGAAATATTGGCCCCAATGGCGATATGGGTCACCTCGAGTATCTTCTCCTTCATACCAATCCGCTTTCCGTATCTGAGAGATCCCAAACCATAGCCAGCGACCCTACCAAGTTCAGTAGCGCCGTAAATGATTATATAGAAGCAGCTAAAGGACTAACATGTGAGATTCTTGATCTTGTGGTGGAGGGTCTGTGGGTCCAAGACAACTTCTCACTCAGCAACCTCATCAAAGACGTCCACAGTGACTCACTCCTCAGGATCAATCAGTACCCTCCCGTGAGCCTAACGGGCAACAAGAATAGTGACACATCCAAACTCGAGCCACATCAGCTCCACAACCAAAATAATAATAATAATAATAACAACATTGGATTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCATGCGATCCAACAACGTGGACGGCCTTCAGATTTCCACCCACGATGGCTTGTGGATCCCTGTCCCCCCTGATCCTAATCAGTTCTTCGTTATGGTTGGTGATGCTCTGCAGGTTTTGACAAATGGAAGGTTTAGAAGCGTGAGACACAGAGTATTGACCAACACAACAAAGGCCAGAATGTCGATGATGTACTTTGCCGCACCACCGCTGAATTGGTGGATCACTCCACTGCCGAAGATGGTGACACCCCTCAATCCAACTCTCTTTAAGCCCTTCACGTGGGCCCAATACAAACAAGCAGCATACTCTCTACGATTGGGAGACACTCGCCTTGATCTCTTCAAGATCCAACGACAACGAGATACCCATCTCGCATCTGCTTCTCCCTGA 1068 0.4822 MVAPCPTSMMVRTKKTKAVGVPTIDLSLERSKLSETVVKACEEYGFFKVVNHSVAKEVISRLEEEGTAFFSKTTSEKRQAGPANPFGYGCRNIGPNGDMGHLEYLLLHTNPLSVSERSQTIASDPTKFSSAVNDYIEAAKGLTCEILDLVVEGLWVQDNFSLSNLIKDVHSDSLLRINQYPPVSLTGNKNSDTSKLEPHQLHNQNNNNNNNNIGFGEHSDPQILTIMRSNNVDGLQISTHDGLWIPVPPDPNQFFVMVGDALQVLTNGRFRSVRHRVLTNTTKARMSMMYFAAPPLNWWITPLPKMVTPLNPTLFKPFTWAQYKQAAYSLRLGDTRLDLFKIQRQRDTHLASASP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01568 355 FunFam Gibberellin 2-beta-dioxygenase 2 4 331 - -
Vian3g01568 355 SUPERFAMILY Clavaminate synthase-like 6 334 - -
Vian3g01568 355 Gene3D - 3 331 IPR027443 -
Vian3g01568 355 Pfam 2OG-Fe(II) oxygenase superfamily 197 293 IPR044861 -
Vian3g01568 355 PRINTS Isopenicillin N synthase signature 37 54 - -
Vian3g01568 355 PRINTS Isopenicillin N synthase signature 218 239 - -
Vian3g01568 355 PRINTS Isopenicillin N synthase signature 254 280 - -
Vian3g01568 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 302 IPR005123 -
Vian3g01568 355 MobiDBLite consensus disorder prediction 186 215 - -
Vian3g01568 355 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 326 - -
Vian3g01568 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 85 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01568 Vian-Chr3 17161448 17165022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01568 12 342 Glycosyltransferase AT5G59530 25.507 1.31e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01568 K04125 - gmx:100779525 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01568 3 17161448 17165022 Vian3g01568 3 17161448 17165022 ECH
Vian2g02807 2 48999379 48999969 Vian3g01568 3 17161448 17165022 PCT