Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian3g01548 | ATGGATGATTTTCCTAAGGGCTTGTGTGGGTGGAGTTGGAAGGAGAACAAGTTGTTTGAGCTGGCTTTGGCCGTGGTAGATGAGAACCACCCAGAACGGTGGGAGATTGTGGCAGCCATGGTGGGAGGAGAAAAGAGTGCAGGGGAAGTTCAAGAACAATATGTATTTCTTTTGGAGGATTTAAATCTCATAGAATCTGGAAAATTGGACCATGAACTGGGAGTGGGAGAACCTCACCCCTGTGTCCTAGTTAACTCAATTGAGTCCTTGTGCTTGTCTGATAGAGATAGCAGCATGTAA | 300 | 0.46 | MDDFPKGLCGWSWKENKLFELALAVVDENHPERWEIVAAMVGGEKSAGEVQEQYVFLLEDLNLIESGKLDHELGVGEPHPCVLVNSIESLCLSDRDSSM | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian3g01548 | 99 | Gene3D | - | 10 | 56 | - | - | |
| Vian3g01548 | 99 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR-RELATED | 9 | 69 | IPR044636 | GO:0003700 | |
| Vian3g01548 | 99 | FunFam | Transcription factor SRM1 | 6 | 71 | - | - | |
| Vian3g01548 | 99 | SUPERFAMILY | Homeodomain-like | 11 | 66 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian3g01548 | Vian-Chr3 | 16923472 | 16923771 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian3g01548 | - | - | var:108325196 | 207.994 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian3g01548 | 3 | 16923472 | 16923771 | Vian3g01548 | 3 | 16923472 | 16923771 | ECH | |
| Vian2g02781 | 2 | 48759423 | 48759800 | Vian3g01548 | 3 | 16923472 | 16923771 | PCT |