Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01534 ATGGCACTCTCATTCTCCTCTGAGGGTGTCTTTCTCTGCATCTTCTTGTTGTATTTGTCTTTGGGATCTGAAGCTCGTAGATCACCCGTTTCTTCTGTGGTTAGCGAAGAGCTTTTCAATTCCATTTTCCTTCACAAAGACAACGCTGCATGTCCTGCTAAAAACTTCTACACCTACGATTCCTTCATCATGGCATGCAGAAGATTCCCTCAATTTGGTGCTAGAGGTAGTTTAATCACACGCAAGCGTGAGGTTGCGGCGTTTCTTGCTCAAATTTCTCAAGAAACCACAGGTGGGTGGGCTACTGCACCCGATGGACCCTATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAGTCCTCAGAGTGACTATTGTAATTCCACCAACCAACAATGGCCTTGTTACCCAGGAAAAACTTACAAAGGAAGAGGTCCAATTCAACTTTCATGGAATTACAACTATGGACCAGCAGGGGAGGCCCTTGGATTTGATGGATTGAGAAACCCTGATGTGGTGTCAAACAATTCATTGATTGCCTTTCAAACAGCTTTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCATCTTGCCACAATGTGATGATTGGAAAATATGTGGCCACAGAAGCTGACATAGCAGCTAATAGAACTGCAGGGTATGGTCTGGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGGTGATTCAAGGATGAATAATCGCATTGGATTCTTCAAAAGATATGCAGCATTGTTCAATGTAGATACAGGACCTAACTTGGATTGTGCATATCAGAAACCCTTTTAA 816 0.4314 MALSFSSEGVFLCIFLLYLSLGSEARRSPVSSVVSEELFNSIFLHKDNAACPAKNFYTYDSFIMACRRFPQFGARGSLITRKREVAAFLAQISQETTGGWATAPDGPYAWGLCFKEEVSPQSDYCNSTNQQWPCYPGKTYKGRGPIQLSWNYNYGPAGEALGFDGLRNPDVVSNNSLIAFQTALWFWMTEQKPKPSCHNVMIGKYVATEADIAANRTAGYGLVTNIINGGLECGIPGDSRMNNRIGFFKRYAALFNVDTGPNLDCAYQKPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01534 271 CDD chitinase_GH19 34 265 - -
Vian3g01534 271 Gene3D Endochitinase, domain 2 116 174 - -
Vian3g01534 271 PANTHER CHITINASE-RELATED 26 269 - -
Vian3g01534 271 ProSitePatterns Chitinases family 19 signature 1. 51 73 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian3g01534 271 Pfam Chitinase class I 33 265 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian3g01534 271 ProSitePatterns Chitinases family 19 signature 2. 178 188 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian3g01534 271 SUPERFAMILY Lysozyme-like 30 271 IPR023346 -
Vian3g01534 271 PIRSF Endochitinase 7 271 IPR016283 GO:0004568|GO:0005975
Vian3g01534 271 Gene3D - 37 271 - -
Vian3g01534 271 FunFam Endochitinase (Chitinase) 116 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01534 Vian-Chr3 16736628 16738102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01534 10 271 Glycoside Hydrolase AT1G02360 71.212 1.15e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01534 - - vra:106754841 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01534 3 16736628 16738102 Vian3g01534 3 16736628 16738102 ECH
Vian2g02771 2 48664129 48665052 Vian3g01534 3 16736628 16738102 PCT