Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01510 ATGGCTAACCACACTATGAAGCTGCTCAACTTGCTTCTTCTCTTAGCCACCACCGTCTCATCAGATCCTGACCTTCTTCAAGACCTCTGTGTCGCTGACCTCTCCTCAGGTGTGAAAGTGAATGGATTCAGCTGCAAAGAAGCATCTAAGATAAATGCCTCAGATTTCTTCTCGAACATACTAGGAAAAGCAGGATCCACCAACAACACCTTTGGGTCAATAGTGACTGGAGCGAATGTTGAGAAAGTCCCAGGACTGAACACACTTGGTGTGTCTCTGTCAAGAATTGACTATGCCCCAGATGGCATAAACCCTCCTCACACTCACCCTCGTGCCACTGAGATTGTCTTTGTGCTTGAAGGCCAACTAGATGTAGGCTTCATAACCACTTCCAATCTCCTCATATCAAAGACCATTAGCAAGGGTGACATATTTGTCTTTCCAAAAGGCTTGCTTCACTTCCAACAGAACAATGCCAACGTCCCTGCTGCTGTCATTTCAGCCTTCAACAGCCAACTTCCAGGGACACAGTCAATTGCTACAACCTTGTTTTCTGCCACACCTTCACTTCCCGACCATGTCTTGACCAAGACCTTCCAGGTTGGTACCAAAGTCGTTCAGAAAATCAAGTCCAGGCTTGCACCTAAGAAGTAA 654 0.4648 MANHTMKLLNLLLLLATTVSSDPDLLQDLCVADLSSGVKVNGFSCKEASKINASDFFSNILGKAGSTNNTFGSIVTGANVEKVPGLNTLGVSLSRIDYAPDGINPPHTHPRATEIVFVLEGQLDVGFITTSNLLISKTISKGDIFVFPKGLLHFQQNNANVPAAVISAFNSQLPGTQSIATTLFSATPSLPDHVLTKTFQVGTKVVQKIKSRLAPKK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01510 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vian3g01510 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Vian3g01510 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Vian3g01510 217 FunFam germin-like protein subfamily 2 member 1 21 215 - -
Vian3g01510 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Vian3g01510 217 Pfam Cupin 63 206 IPR006045 -
Vian3g01510 217 CDD cupin_OxOx 22 213 IPR001929 GO:0030145
Vian3g01510 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Vian3g01510 217 Gene3D Jelly Rolls 21 215 IPR014710 -
Vian3g01510 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 211 - -
Vian3g01510 217 SMART Cupin_1_3 58 207 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01510 Vian-Chr3 16499136 16500433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01510 8 217 Miscellaneous Gene Families AT3G05930 56.398 2.12e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01510 - - gmx:100791828 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02747 2 48416442 48417491 Vian3g01510 3 16499136 16500433 PCT