Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02747 ATGAAGCTCACAGCCTCGCTCCTACTATTCACTTTTGCTTTGGTGTTAACCACCACCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGATCTTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGCGAAGGTAAATGCGACTGATTTCTTCTCAAACATATTAGCGAAAGCAGGTGCGACAAACAACACCTATGGGTCCTTGGTGACTGCAGCCAATGTTCAGAAAATCCCAGGACTGAACACCCTTGGTGTATCTATGTCACGAATTGACTATGCTCCAGGTGGGATCAACCCTCCTCACACGCACCCACGTGCCACCGAGATTGTGTTTGTGATGGAAGGAACACTCGATGTGGGATTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCACCAAGGGTGAGACTTTTGTGTTCCCAAAAGGCTTAGTTCATTTCCAAAAGAACAATGCGAAGGAACCTGCTTCGGTCATTGCAGCCTTCAACAGTCAATTGCCTGGCACACAGTCCATTGCTCTCACCCTCTTTACAGCCACACCACCTGTTCCAGACAATGTCTTGACCAAGGCCTTCCAGATTGGTACCAAGGAGGTTGAGAAAATCAAGACCAGGCTTGCACCTAAGAAATAA 657 0.4734 MKLTASLLLFTFALVLTTTTASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNATDFFSNILAKAGATNNTYGSLVTAANVQKIPGLNTLGVSMSRIDYAPGGINPPHTHPRATEIVFVMEGTLDVGFITTANVLISKTITKGETFVFPKGLVHFQKNNAKEPASVIAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQIGTKEVEKIKTRLAPKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02747 218 Pfam Cupin 63 207 IPR006045 -
Vian2g02747 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Vian2g02747 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Vian2g02747 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Vian2g02747 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 212 - -
Vian2g02747 218 SMART Cupin_1_3 59 208 IPR006045 -
Vian2g02747 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Vian2g02747 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Vian2g02747 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Vian2g02747 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Vian2g02747 218 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02747 Vian-Chr2 48416442 48417491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02747 8 218 Miscellaneous Gene Families AT3G05930 57.075 1.30e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02747 - - gmx:100302722 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02747 2 48416442 48417491 Vian3g01510 3 16499136 16500433 PCT