Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01170 ATGTCCAAACCTCAAAATGATCCCCTTCTGCAATCGGAAACAACTTGTGGAACACTTCTCTATGAGCTTCAGATAATATGGGACGAAGTTGGGGAGTCTGAAACTGACAGAGATAGAATGTTGTTTGAGCTTGAACAAGAGTGCCTAGAAGTATACAGAAGGAAGGTAGATCTGGCAAATCGATCTAGGGCTCAATTAAGGCAGGCTATCGCTGATTGTGAGGCAGAACTTGCCGCTATTTGTTCATCAATGGGAGAGAGACCAGTGCATATTCGTCAGACTGATCAAAATGTTGGTAGCCTCAAGGAAGAGCATGCAAGAATTCTTCCGCAGTTGGAGGAGATGCAAAAAAGGAAATCTGAGCGTAGAAATCAATTCATAGAAGTCCAAGAGCAGATTCAGAGCATTTCAATTGAAATACATGGTCCTAGAGAGTATATTTCCGCTGTCATAGATGAAACTGATTTATCCGTGAGAAAACTTGAAGAATTGCATATGCAGTTACATGCACTTCAGATTGAGAAGAGTAGTCGCTTAAAGCAAGTCCAGGAGTACCTGTATACATTAAATTCTCTATGTTCAGTGCTTGGTTTGGACTTCAAGCAGACAATTAATGGAATTCATCCTAGTTTATTGGAATCAGAAGGATCTAAGAGTGTAAGTAATGACACCATTCAACAATTAGCGGTTGCTATAGAAGAACTGCGGGAGGTTAAATTGCAGAGAATGCAGAAGCTCCAAGATCTTGCTACTTCAATGTTGGAGCTCTGGAACTTAATGGATACCCCTGTTGAAGAGCAACAGATGTTTCAAAATGTTACATGTAATATAGCCGCTTCAGAACATGAAGTAACTGAACCAAACACCTTGTCTGTGGAGTTCATCAATTTGGTTGAGGCGGAAGTAGCTAGGTTAGAAAAGTTGAAATCAAGCAAGATGAAAGAGCTTGTATTAAAAAAGAGAACAGAGCTGGAGGAGATTTGTCGAAAGACTCATTTGATTCCAGAAATAGATAATGCAGTGGAATATGCTGTTGAAGCCATAGAATCTGGTTCTGTGGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCAGGTTGCCCAAGTCAAAGAAGAAGCTTTTAGCAGAAAAGAGATACTTGAAAGGGTTGAGAAATGGTTGGCAGCATGCGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGATAATCGATACAATGCTGGGAGAGGTGCTCATCTTACTCTCAAGCGAGCTGAGAAAGCTCGTGCCTTGGTCAACAAAATTCCAGCAATGGTGGATGGTCTGACTTCCAGAACTATTGCATGGGAGAAGGAAAAAGGCATTGAATTCACATATGATGGTATTCGTCTACTCTCTATGCTTGAAGAATACACTATATTACGCCAAGAGAAAGAGCAAGAACGCCGTAGGCAGCGGGATTTGAAGAAACTACAGGGACAAATGATAGCGGAACAGGAGGCACTATATGGGTCAAAACCAAGCCCTTCCAAGCCCCAGAGTGTAAAAAAGGGGTCTAGGATGTCAACAGGAGGAGCAACTAGTAGGAGAGTCTCGCTTGGGGGAGCAATGCTTCAAACTCCAAAGCCTGATTCTAAAGCTACTCGTGCCATGAGAAAGACTGACAAAGGGCACCAAATTGAGCATTTAAGTTACCTGGATGATGGCATTTCAGGTTTATCAGCAGCTAGAAGAGGGCTGGATATTGCTGGCGTTCCTGTTAAAAAACACTCATTTGGTGCTGGGACTCAAATCATAGAATCTCCTCTGACACGACAACCTTTTTCTCCTATCTGTTCTAACAATGTAGCTTCAAAAGCTAATGTGGCAAATGCTACAGATGAACATAAACCGGGTGAGAAGTTGCAGAGAACACTGTCGCTTAACAATGTACCATTCACTACTCCCTCCAAGACAGCTACTACTTTGGTAGATGAAGAGAATAGAACTCCAAAGACAATGCCCATTCCTTTCCCAGCTACACCATCCACAGTATCAATTCCAATGAGTATGGCTATGACTCCAGTTCCTTCATCAATTATAAAGAATATAAACTTGAATCCAACTCTCACAAACACAGTAGTTCCTTATGGAAATGACTTGGTTCAAGAGATTGATTATTCCTTTGAGGAAAAAAGGCTCGCTTATATGATGTTAGCATGA 2184 0.4167 MSKPQNDPLLQSETTCGTLLYELQIIWDEVGESETDRDRMLFELEQECLEVYRRKVDLANRSRAQLRQAIADCEAELAAICSSMGERPVHIRQTDQNVGSLKEEHARILPQLEEMQKRKSERRNQFIEVQEQIQSISIEIHGPREYISAVIDETDLSVRKLEELHMQLHALQIEKSSRLKQVQEYLYTLNSLCSVLGLDFKQTINGIHPSLLESEGSKSVSNDTIQQLAVAIEELREVKLQRMQKLQDLATSMLELWNLMDTPVEEQQMFQNVTCNIAASEHEVTEPNTLSVEFINLVEAEVARLEKLKSSKMKELVLKKRTELEEICRKTHLIPEIDNAVEYAVEAIESGSVDPACVLEQIELQVAQVKEEAFSRKEILERVEKWLAACDEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARALVNKIPAMVDGLTSRTIAWEKEKGIEFTYDGIRLLSMLEEYTILRQEKEQERRRQRDLKKLQGQMIAEQEALYGSKPSPSKPQSVKKGSRMSTGGATSRRVSLGGAMLQTPKPDSKATRAMRKTDKGHQIEHLSYLDDGISGLSAARRGLDIAGVPVKKHSFGAGTQIIESPLTRQPFSPICSNNVASKANVANATDEHKPGEKLQRTLSLNNVPFTTPSKTATTLVDEENRTPKTMPIPFPATPSTVSIPMSMAMTPVPSSIIKNINLNPTLTNTVVPYGNDLVQEIDYSFEEKRLAYMMLA 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01170 727 Gene3D - 365 499 - -
Vian3g01170 727 Coils Coil 112 132 - -
Vian3g01170 727 Coils Coil 49 76 - -
Vian3g01170 727 Coils Coil 295 315 - -
Vian3g01170 727 FunFam 65-kDa microtubule-associated protein 6 366 499 - -
Vian3g01170 727 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 547 IPR007145 GO:0000226|GO:0008017
Vian3g01170 727 MobiDBLite consensus disorder prediction 500 523 - -
Vian3g01170 727 MobiDBLite consensus disorder prediction 492 542 - -
Vian3g01170 727 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 507 - -
Vian3g01170 727 Coils Coil 458 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01170 Vian-Chr3 12974830 12978921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01170 11 539 EF-hand Containing Proteins AT5G62250 57.328 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01170 K16732 - gmx:100777734 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01188 8 30515306 30519722 Vian3g01170 3 12974830 12978921 ECH
Vian3g01170 3 12974830 12978921 Vian3g01170 3 12974830 12978921 ECH
Vian8g01188 8 30515306 30519722 Vian3g01170 3 12974830 12978921 PCT