Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00419 ATGAAGCTTCGGAGATCTTCGTTCTGCGTCTGTCTAGGGTTTCTGGTGCTGTTCCTTTCGGCGCCGTCAATGGCGAAATTCGTGGTGGAGAAGAACAGTTTGACGGTGACGTCACCGGACAACATCAAGGGAACGCACGATAGCGCGATTGGGAACTTTGGGATACCTCAATACGGAGGCAGCATGGCTGGGAACGTGGTGTATCCTAAGGACAATAAAAAGGGTTGCAAGGAGTTTGATGAGTCTGGGATTTCCTTCAAATCTAAACCCGGTGCTCTTCCCACTATCGTTTTGCTCGATCGAGGAAATTGTTTCTTTGCTTTGAAGGTCTGGAATGCACAAAAGGCCGGAGCTTCTGCTGTTCTTGTTGCAGATGACATTGAGGAAAAGTTGATCACCATGGACACTCCTGAAGAAGATGGGTCTTCTGCAAAATATATAGAGAACATAACAATACCATCTGCCCTCATTGAAAAAAGTTTTGGTGGAAAGTTAAAGGATGCCATAAGTAATGGGGATATGGTCAATGTAAATCTGGATTGGAGAGAGGCTGTCCCCCACCCAGATGATCGTGTGGAGTATGAACTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGACATGTTGATGGAATTTGTGAAAGATTTTAAGGGTGCGGCACAGATATTAGAGAAAGGTGGTTATTCTCAATTTACGCCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTAAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGGAGATATTGTGCTCCAGATCCTGAGCAGGATTTCAGTACTGGATATGACGGAAAGGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCTAATGAAACCAAAAAGCCTTGGGTGTGGTGGGATTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAATACAACAAGAAGTGTGCAGATGCTGTCATTGAATCACTTGGCCTTGATCTTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATAGTGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGGAAGGGATCACGAGGTGACGTTACCATATTGCCTACCCTAGTTGTCAACAATAGACAGTATCGAGGGAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTGCTGGTTTCGAAGAAACTACTGAACCTGCTATTTGTTTGAGCAGTGATGTGGAGACAAATGAGTGCTTGGAGAATAATGGTGGTTGTTGGCAGGATAAATCAGCTAATATCACCGCATGCAAGGATACGTTCCGTGGGAGAGTATGTGAGTGCCCCTTGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACATGTGCAGCTAGTGGACCTGGGCGGTGCAAGATAAACAACGGAGGTTGTTGGCATGAAGCTCGGAATGGGCATGCATATTCTGCCTGTTTGGATGATGGAGGGGTAAAATGCAAGTGTCCTGCAGGCTTTAAAGGTGACGGTGTCAAAAATTGTGAAGACATTGATGAATGCAGAGAGAAGAAAGGTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGAGTGCACTTGCAGTGGAGATCTTTTGTATATAAGGGACCACGATACTTGCATAAGTAAAACTGCCCGTCAGGAGGGAAGATCAGCTTGGACTGCTTTTTGGGTTATTTTAGTTGGCTTAGTTATGGCTGCTGCTGGGGCATACCTCCTGTACAAATATAGAATAAGGTCTTATATGGATTCCGAGATCAGAGCCATCATGGCACAGTATATGCCCTTGGACAGCCAATCAGAGGTTGTAAATCATGCCAACGATGAAAGAGCGTGA 1893 0.4432 MKLRRSSFCVCLGFLVLFLSAPSMAKFVVEKNSLTVTSPDNIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDESGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGGKLKDAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYSQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDLKKIERCMGDPNSDSENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAICLSSDVETNECLENNGGCWQDKSANITACKDTFRGRVCECPLVDGVQFKGDGYTTCAASGPGRCKINNGGCWHEARNGHAYSACLDDGGVKCKCPAGFKGDGVKNCEDIDECREKKGCQCPECSCKNTWGSYECTCSGDLLYIRDHDTCISKTARQEGRSAWTAFWVILVGLVMAAAGAYLLYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHANDERA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00419 630 CDD EGF_CA 518 546 - -
Vian3g00419 630 Gene3D - 24 188 - -
Vian3g00419 630 FunFam vacuolar-sorting receptor 1 411 467 - -
Vian3g00419 630 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Vian3g00419 630 Gene3D Laminin 472 522 - -
Vian3g00419 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Vian3g00419 630 CDD PA_VSR 52 179 - -
Vian3g00419 630 Gene3D Laminin 411 467 - -
Vian3g00419 630 MobiDBLite consensus disorder prediction 346 368 - -
Vian3g00419 630 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 8 619 - -
Vian3g00419 630 Gene3D Laminin 523 559 - -
Vian3g00419 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Vian3g00419 630 FunFam Vacuolar-sorting receptor 1 24 188 - -
Vian3g00419 630 MobiDBLite consensus disorder prediction 346 365 - -
Vian3g00419 630 SMART egfca_6 518 560 IPR001881 GO:0005509
Vian3g00419 630 Pfam PA domain 63 162 IPR003137 -
Vian3g00419 630 SUPERFAMILY PA domain 32 148 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00419 Vian-Chr3 3933377 3938659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00419 25 630 Miscellaneous Gene Families AT2G14740 83.828 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00419 - - gmx:100803958 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00419 3 3933377 3938659 Vian3g00419 3 3933377 3938659 ECH
Vian10g00027 10 231125 234839 Vian3g00419 3 3933377 3938659 PCT