Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00027 ATGAAGGTTTGGAGATGGTTGCTGAGTTTGTTTGTGGGGTTATTGTTGCCTGTGTCGATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGGCGTCGCCGGAGAAAATAAGAGGCACTCACGACAGTGCCATTGGGAACTTCGGCATCCCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAGAAAGGTTGTAAAGAGTTTGATGAGTCTGGGATTTCCTTCAAATCAAGTCCCGGTGCTCTTCCCACCATTGTTCTGCTCGATCGCGGAAGTTGCTTCTTTGCATTGAAGGTCTGGAATGCTCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTGATAACTATGGACACACCTGAGGAGGATGGCTCATCTGCCAAATATGTGGAGAACATAACTATACCATCTGCTCTTGTTGGAAAAAGTTTTGGTGAAAAGTTAAAGGATGCCATAAGTGGTGGGGACATGGTCAATGTAAATCTTGATTGGAGAGAGTCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGACATGTTGATGGAATTTGTGAAGGATTTCAAGGGCGCAGCACAGATACTAGAGAAAGGCGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCTTTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGTGCTCCAGACCCTGAGCAGGACTTCAGCACAGGTTATGACGGGAAAGATGTGGTTGTTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCGAATGAAACTGGAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAAAAGTACAATAAGGAATGTGCAGATGCTGTTATTAAATCACTGGGTCTTAATATTGAAAAGATTGGAAAATGCATGGGCGATCCAGAAGCTGATGCTGATAATCCTGTCTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACAATTTTGCCTACTCTCGTGGTCAATAACCGACAATATCGAGGAAAATTGGAGAAAGGGGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCCTGAGCACTGATGTGGAGACAAATGAGTGCTTGTCAAACAATGGTGGTTGTTGGCAGGATACAGCAGCTAACATCACTGCGTGCAAGGATACATTCCGTGGTAGAGTATGTGAATGCCCCCTGGTTGACGGTGTTCAATTCAAGGGAGATGGTTATACATCTTGTGAAGCAAGAGGACTTGGACGTTGCAAGATAAACAATGGAGGATGTTGGCATGATGCCCGAAATGGACATGCTTTTTCTGCTTGTTTGGATAACGGAGGGGTCAAATGCCAGTGTCCCACAGGATTTAAAGGTGATGGTGTCAAAAGTTGTGAAGATATTGACGAATGCAGAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACATGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTCCTATATATGAGGGACCACGATACCTGCATAAGTAAAATTGGAAGTCAGGGAAGATCTCCTTGGGCTGCGTTTTGGCTGATTCTACTTGGCGTGGTTATGATTTCTGGTGGGGCATTCCTAGTGTACAAGTATAGAATAAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAGGCAGAAGTTCCAAATCATGTGAATGATGAAAGAACATGA 1881 0.4482 MKVWRWLLSLFVGLLLPVSIMGRFVVEKNSLRVASPEKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDESGISFKSSPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVANETGKPWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLNIEKIGKCMGDPEADADNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSTDVETNECLSNNGGCWQDTAANITACKDTFRGRVCECPLVDGVQFKGDGYTSCEARGLGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFKGDGVKSCEDIDECREKKACQCPECSCKNTWGSYDCSCSGDLLYMRDHDTCISKIGSQGRSPWAAFWLILLGVVMISGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDERT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00027 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Vian10g00027 626 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 2 615 - -
Vian10g00027 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Vian10g00027 626 CDD PA_VSR 49 176 - -
Vian10g00027 626 FunFam vacuolar-sorting receptor 1 408 464 - -
Vian10g00027 626 Pfam PA domain 60 162 IPR003137 -
Vian10g00027 626 Gene3D Laminin 520 557 - -
Vian10g00027 626 Gene3D Laminin 408 464 - -
Vian10g00027 626 CDD EGF_CA 515 543 - -
Vian10g00027 626 FunFam Vacuolar-sorting receptor 1 21 185 - -
Vian10g00027 626 Gene3D - 21 185 - -
Vian10g00027 626 Gene3D Laminin 469 519 - -
Vian10g00027 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Vian10g00027 626 SUPERFAMILY PA domain 92 169 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00027 Vian-Chr10 231125 234839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00027 22 626 Miscellaneous Gene Families AT2G14740 84.959 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00027 - - gmx:100820115 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00027 10 231125 234839 Vian10g00027 10 231125 234839 ECH
Vian10g00027 10 231125 234839 Vian3g00419 3 3933377 3938659 PCT