Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00089 ATGGCCTCTCACCCAAACCAAACAGGAACGGGAGCTGACGGGCAAGGAGAAAAGGACCCCCCATCGCCGATCCCAGCATCAGCCTTTCAGAATCCACTTTCTGAGATATCGCCGTCACCGTCGCCGTCGCCGTCCTCATCGACAGCTCCGGCGCTGGTGCTTTCGAACTCGGGGAAGCGCATCGACCAGACGGGGAGGAAGAAGTACGTGAAACAAGTGACGGGGCGGCATAACGACACGGAGCTGCACCTGGCGGCACAGAGGGGCGACGTCGGCGCCGTGAGACAGATCCTTCTCGACGTCGAATCTCAGGTTATGGGAACTCTCGGCGACGGCGACGACGACGATCTCGACACCGAGATTGCGGAAGTGCGAGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCAGCTGAAAAGGGTCATCTCCATGTCGTGAAGGAGCTTCTCAACCATTCCACTGCTCAGACTGTTTCCAAGAAGAACCGATCGGGATTTGATCCCTTGCATATTGCAGCTAGTAAAGGCCACCACTCAATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCATCCAATTCGACTCCACTTATAACTGCAGCGACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCTTTGCATTTGGCAGCTCGTCAGGGCCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGAAGGACTGACAAGAAAGGGCAAACTGCATTGCACATGGCTGTAAAAGGGCAGAGTTGTGACGTGGTAAAGTTACTTCTTGATGCAGATGCTGCCATTGTTATGCTTCCTGACAAATTTGGTAACACAGCATTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTACATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAAGCCTTCCACTCTGTGAAGAGGCATCAGATATAAAAGAATGTCTTTCTCGAGACGGAGCACTCAGAGCTAACGAGCTCAACCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACGCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGTTAAGGAAGCTTCATAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCAGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGTGGTGATAACGATGATGGCTCAGCGGTGGTAGCAGCTTATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCTATTGCACTTTTTACATCTTTGGCCGTGGTGGTTGTTCAAATCACCTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTCATCAACAAGCTCATGTGGCTGGCTTCTGTTTGCACTTCAGTGGCATTTATTGCTTCTTCTTACATAGTTGTGGGTAGGAAGAATAGGTGGGCTGCTATTCTTGTTACATTAGTTGGAGGGGTGATAATTTCTGGAGTTATTGGCACCATGACTTTCTATGTAGTGAGATCTAAGAGAAGCAGGTCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAACTCTGAGGTTGATCGGATTTATGCTATTTGA 1797 0.4758 MASHPNQTGTGADGQGEKDPPSPIPASAFQNPLSEISPSPSPSPSSSTAPALVLSNSGKRIDQTGRKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVESQVMGTLGDGDDDDLDTEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASKGHHSIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAESLPLCEEASDIKECLSRDGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSAVVAAYAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNRWAAILVTLVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00089 598 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 49 582 - -
Vian3g00089 598 SUPERFAMILY Ankyrin repeat 82 351 IPR036770 -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat region circular profile. 238 261 - -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Vian3g00089 598 FunFam Ankyrin repeat-containing protein ITN1 51 196 - -
Vian3g00089 598 Gene3D - 197 407 IPR036770 -
Vian3g00089 598 MobiDBLite consensus disorder prediction 1 66 - -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat region circular profile. 135 159 - -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat profile. 170 192 IPR002110 GO:0005515
Vian3g00089 598 MobiDBLite consensus disorder prediction 46 60 - -
Vian3g00089 598 FunFam Ankyrin repeat-containing protein ITN1 isoform A 197 396 - -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat region circular profile. 272 299 - -
Vian3g00089 598 Pfam Domain of unknown function 420 526 IPR026961 -
Vian3g00089 598 Gene3D - 56 195 IPR036770 -
Vian3g00089 598 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 238 267 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 135 164 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 306 336 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 204 233 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vian3g00089 598 SMART ANK_2a 272 301 IPR002110 GO:0005515
Vian3g00089 598 ProSiteProfiles Ankyrin repeat region circular profile. 170 192 - -
Vian3g00089 598 Pfam Ankyrin repeats (3 copies) 270 335 IPR002110 GO:0005515
Vian3g00089 598 Pfam Ankyrin repeats (3 copies) 204 263 IPR002110 GO:0005515
Vian3g00089 598 Pfam Ankyrin repeats (3 copies) 82 196 IPR002110 GO:0005515
Vian3g00089 598 ProSiteProfiles Ankyrin repeat profile. 135 167 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00089 Vian-Chr3 693561 696670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00089 24 598 Miscellaneous Gene Families AT3G12360 79.688 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00089 - - pvu:PHAVU_007G008900g 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02303 2 43429628 43432003 Vian3g00089 3 693561 696670 ECH
Vian3g00089 3 693561 696670 Vian3g00089 3 693561 696670 ECH