Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02303 ATGAAGAGACAATTGACAGGTATACGGGGTGATTCTCCCCTGCAATCTGCAATACGAGCTGGGAATTTAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCCGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTATATGTTGCAGCTGATAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATGCTGGGTTGGCCGGCTTCAAAGCTCGGAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGACACTTGGAGATATTGAAGGTCCTCATGGAGTTTATTCCTGAAATTTCAATGACTGTTGATCTGACAAACACCACTGCGTTGCATACTGCTGCAGCACAAGGACATATTGAGGTAGTAAATTTTCTCTTGGAAAATGGTAGCAGCTTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTGGAGGTAGTCAAGGCCATTCTGAACAAAGAACCTGAAATTGCAGTGAGAATGGATAAGAAGGGGCAGACAGCGCTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTTGTGAAACTGAATTCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCAGGAAGGGTCGTTTACAGGTTGTTCAGAAGCTACTAGATTGCAAAGAAATAGACACAGATGTTGTTAACAAATCTGGAGAAACTGCCTTGGATGCTGCAGAGAAAAATGGTCGGTTGGAAATCTCGAACTTTCTGCAACACCGGGGAGCACAAAGTGCCAAGTCCATCAAATCACCTAATACAAACACAGCCCTTGAGCTGAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACTTTCAAAACACAGAGACGTATGAGAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAAGGGCTTAACAATGCCATCAACTACAACACTATTGTGGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCCGAGCAACAAGATAAACTCTCTCCTGAGATGTCTCCTGGGGAAGCATACATTGCTCCTGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAGATGATGGCAGTTATAAACAAGCTGATGTGGGTGGCTTGTGTGCTGATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTTTAGGGACAGTGATTATGGCAGCAACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTCGAACAACAATGAGCAGTAGGCAGTCAGTGTCTTTGTCAATGATGTCAGGATCGGAGAATGAGTACAAGACAGTGTACGCCATATAA 1563 0.4312 MKRQLTGIRGDSPLQSAIRAGNLELVREIISQSPEGELKELLSKRNNSCETALYVAADNGHLDIVKELIRYHDAGLAGFKARNGFDAFHIAAKNGHLEILKVLMEFIPEISMTVDLTNTTALHTAAAQGHIEVVNFLLENGSSLVTIAKSNGKTVLHSAARNGHVEVVKAILNKEPEIAVRMDKKGQTALHMAVKGQNLELVDELVKLNSSLANMVDAKGNTALHIATRKGRLQVVQKLLDCKEIDTDVVNKSGETALDAAEKNGRLEISNFLQHRGAQSAKSIKSPNTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMRGIAKRINKMHTEGLNNAINYNTIVAVLIATVAFAAIFNVPGQYPEQQDKLSPEMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSFIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSVSLSMMSGSENEYKTVYAI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02303 520 ProSiteProfiles Ankyrin repeat region circular profile. 151 178 - -
Vian2g02303 520 Gene3D - 145 313 IPR036770 -
Vian2g02303 520 Pfam Ankyrin repeats (3 copies) 80 144 IPR002110 GO:0005515
Vian2g02303 520 Pfam Ankyrin repeats (3 copies) 9 72 IPR002110 GO:0005515
Vian2g02303 520 Pfam Ankyrin repeats (3 copies) 151 209 IPR002110 GO:0005515
Vian2g02303 520 ProSiteProfiles Ankyrin repeat region circular profile. 117 144 - -
Vian2g02303 520 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Vian2g02303 520 ProSiteProfiles Ankyrin repeat region circular profile. 185 212 - -
Vian2g02303 520 ProSiteProfiles Ankyrin repeat profile. 83 105 IPR002110 GO:0005515
Vian2g02303 520 ProSiteProfiles Ankyrin repeat region circular profile. 219 241 - -
Vian2g02303 520 SUPERFAMILY Ankyrin repeat 13 278 IPR036770 -
Vian2g02303 520 ProSiteProfiles Ankyrin repeat profile. 219 241 IPR002110 GO:0005515
Vian2g02303 520 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Vian2g02303 520 Pfam Ankyrin repeat 220 248 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 185 214 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 117 147 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 253 282 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 151 180 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 9 40 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 48 76 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 219 249 IPR002110 GO:0005515
Vian2g02303 520 SMART ANK_2a 83 112 IPR002110 GO:0005515
Vian2g02303 520 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Vian2g02303 520 Pfam Domain of unknown function 333 448 IPR026961 -
Vian2g02303 520 Gene3D - 2 144 IPR036770 -
Vian2g02303 520 ProSiteProfiles Ankyrin repeat region circular profile. 83 105 - -
Vian2g02303 520 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02303 Vian-Chr2 43429628 43432003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02303 1 520 Miscellaneous Gene Families AT1G07710 62.664 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02303 - - gmx:100787392 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02303 2 43429628 43432003 Vian3g00089 3 693561 696670 ECH
Vian2g02303 2 43429628 43432003 Vian2g02303 2 43429628 43432003 ECH