Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03196 ATGTCTCCTTCTTCCCCTAATGCTATTTGTGTGTGCAATTGCATTTCAAATGTGACACTTCATGTCAGGAAGCATATGATATATGAAATAGTTTGCATTTTTGACAGATGGACATCCTTTGACGTTGAAGATAGCTCTGTAGATGACTTTTGTGGCCTTGTAGTGACAGCAGGAAAGTCTGGCAGTTTCAGGATGTCAGAGCCTGTGAAGTCTCCACCTACTAAGAAGTCTCGTAGAGATAGAAGCAGGGGCAAATCATCTGGACGATCCTGTTCAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATAGCACGACTTCCCATTGCTACATTTTTCCGCTTCCGCTCTGTCTGCCGGAAGTGGAATTCCATGCTCACTTCTCAAAGTTTTTCTCAGTATTGTACTCAAGTTACACAAGCAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCTATGTACGACCCTTCTTTGAAAAAATGGCACCACCCAACTATATCGACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGTGGTTTAGTTTGCTTTCTTGACATTGGTCATCGTAACTTCTTTGTTTGCAACCCACTGACTCAATCCTTCAGGGAGTTGCCAGCTCGATCAGTTAAGGTCTGGTCTCGGGTTGCTGTAGGGATGACAATTAATGGAAACTCGGCTGGTTCAGGCTATAAGATCTTATGGGTTGGTTGTGATGGAGAATATGAAGTCTACGACTCGGTCAGAAATTCTTGGATTCGTCCTGGAAACATGCCTGCAGGTATGAAGCTGCCACTGTCGCTCAACTTTAGGTCTCAAGCTGTCTCTATTGATAGCATGCTTTACTTCATGCGATCAGACCCAGAAGGGATTGTTGCTTACGATATGGCAACTGGGGTATGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCCGAGTGTGATGGCCAGATCATGCTTGTGGGTTTGCTCACAAAGAATGCAGCTACTTGTGTATGCATATGGGAGCTGCAGAAAATGACACTATTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCCTGAGATCGAAACAAATGAATAGATTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTCCCTGGGTGTGTGGTGCCGCGTGGGAGAAAAAGACAGTGGATAGCTTGTGGTACTGCATTTCATCCATGCCTGACAGCTGTGGCATGA 1353 0.4435 MSPSSPNAICVCNCISNVTLHVRKHMIYEIVCIFDRWTSFDVEDSSVDDFCGLVVTAGKSGSFRMSEPVKSPPTKKSRRDRSRGKSSGRSCSTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRKWNSMLTSQSFSQYCTQVTQANPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFRELPARSVKVWSRVAVGMTINGNSAGSGYKILWVGCDGEYEVYDSVRNSWIRPGNMPAGMKLPLSLNFRSQAVSIDSMLYFMRSDPEGIVAYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03196 450 MobiDBLite consensus disorder prediction 62 91 - -
Vian2g03196 450 Gene3D - 137 438 IPR015915 GO:0005515
Vian2g03196 450 Pfam F-box domain 101 140 IPR001810 GO:0005515
Vian2g03196 450 ProSiteProfiles F-box domain profile. 98 143 IPR001810 GO:0005515
Vian2g03196 450 SMART fbox_2 104 144 IPR001810 GO:0005515
Vian2g03196 450 SUPERFAMILY F-box domain 96 176 IPR036047 GO:0005515
Vian2g03196 450 Gene3D - 101 136 - -
Vian2g03196 450 FunFam F-box only protein 6 151 437 - -
Vian2g03196 450 CDD F-box_AtFBW1-like 103 140 - -
Vian2g03196 450 PANTHER BNACNNG10540D PROTEIN 76 444 - -
Vian2g03196 450 FunFam F-box only protein 6 101 140 - -
Vian2g03196 450 SUPERFAMILY Galactose oxidase, central domain 165 431 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03196 Vian-Chr2 52367236 52368588 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03196 - - gmx:100810179 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03196 2 52367236 52368588 Vian1g02661 1 39645618 39648327 PCT