Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02661 ATGGAAGAAGATGAAGAAGAGGGCCATGCCATACTCATCACTCACCTTCACCATCACCATTTCTCTCACACACTCTCACCTTCTTTTACCCTTCAACCTCACCAACACACTCACCCCACACTCTCTCAACAACTCTCCAGATGGTCCTTCTATGGCGTTGATGATTACTTCGTAGATGATTTCTGTGGCCCTGTAATGGCAGCTGGCAAGTCTGTTCCAGAGTCTGGAAGTTTCAGGATGATGGAGCCTCTAAAGCATGCATCTAAGAAGTCTCGAAGAGACAGGAGCCGAGGAAAATCATCTGGGAGGTCCTCCAGCGATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCGGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCAATTGCAACATTTTTCCGCTTCCGCACTGTATGCCAGCGATGGAATTCCTTGCTGAGTTCACAAAGTTTTTCTCAGCATTGTGCTCAAGTCCGACAAGCCAACCCATGGTTTTACACTGTTACTCATGAACATACAAATTCTGCAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCACTACATCAGCACTGCCTGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTTTAGTTTGCATTCTTGACGTATATGGTCAAACTTTATATGTTTGTAACCCATTGATTCAATCCCTAAATGAGTTACCATCTTGTTCAGTAAGGGTTGGGTCTCGCGCTGCTGTAGGAATGACAGTAGATGAGAACTCAACCGGTGCTGTCTACAGGATCCTGTTGGTGGGTTGTGATGGAGAATATGGAATTTATGACTCGATAACAAAGTCATGGAGCTATCCAGGAAACATGCCGGCAGATATTAAGCTGCCGCTATCTCTCAATTTTAGGTCACAAGCGATTTCTATTGACAGCACCCTTTACTTCATGCATTCAGATCCTGAAGGGATTGTTTCCTATAATATGGCAACTGGGGTTTGGGTGCAGTACATAATCCCAGCGCCATTGCATCTGAGTGACCGCACACTGGCTGAGTGTGATGGTCGGATATTGCTTGTGGGGTTGCTCACAAAGAATGCAGCCACCTGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGAATTGCTTGGGAAACAAAGGCTTGCTCTTGTTATCATTGAGATCAAGACAAATGAATCGATTGGTTACGTACAACATAGCAACTAAGGAATGGGTGAAGGTTCCTGGGTGTGTGGTTCCACGTGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCGTGCCTCACTGCGACGGCTTGA 1395 0.4566 MEEDEEEGHAILITHLHHHHFSHTLSPSFTLQPHQHTHPTLSQQLSRWSFYGVDDYFVDDFCGPVMAAGKSVPESGSFRMMEPLKHASKKSRRDRSRGKSSGRSSSDEAMEQQIWKDLPEDLFEPVIARLPIATFFRFRTVCQRWNSLLSSQSFSQHCAQVRQANPWFYTVTHEHTNSAAMYDPSMKKWYHPTTSALPAELIVLPVASAGGLVCILDVYGQTLYVCNPLIQSLNELPSCSVRVGSRAAVGMTVDENSTGAVYRILLVGCDGEYGIYDSITKSWSYPGNMPADIKLPLSLNFRSQAISIDSTLYFMHSDPEGIVSYNMATGVWVQYIIPAPLHLSDRTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMNCLGNKGLLLLSLRSRQMNRLVTYNIATKEWVKVPGCVVPRGRKRQWIAHGTAFYPCLTATA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02661 464 Gene3D - 115 150 - -
Vian1g02661 464 FunFam F-box only protein 6 165 451 - -
Vian1g02661 464 Pfam F-box domain 115 154 IPR001810 GO:0005515
Vian1g02661 464 SUPERFAMILY F-box domain 109 191 IPR036047 GO:0005515
Vian1g02661 464 SMART fbox_2 118 158 IPR001810 GO:0005515
Vian1g02661 464 Gene3D - 151 452 IPR015915 GO:0005515
Vian1g02661 464 FunFam F-box only protein 6 115 154 - -
Vian1g02661 464 SUPERFAMILY Galactose oxidase, central domain 179 445 IPR011043 -
Vian1g02661 464 ProSiteProfiles F-box domain profile. 112 157 IPR001810 GO:0005515
Vian1g02661 464 PANTHER BNACNNG10540D PROTEIN 86 440 - -
Vian1g02661 464 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02661 Vian-Chr1 39645618 39648327 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02661 - - pvu:PHAVU_002G173200g 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02661 1 39645618 39648327 Vian1g02661 1 39645618 39648327 ECH
Vian2g03196 2 52367236 52368588 Vian1g02661 1 39645618 39648327 PCT