Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03186 ATGTTTTCAGACATGCCGTTCCCTTCCAAAAGACAAAAAACATCGCCGGATAAAACCTCTGACTTCTTCGAATATTTGCCGGACGATCTTCTCCTCTCTATCCTCTGCAAGCTCAGTGCCACAGCATCTTCACCCTCCGATTTTATCAATGTATTAGTAACGTGCAAAAGACTAAACTCTCTAGGCCTTCACTCTCTCGTGTTATCGAAAGCATCCCACAAAACATTCTCAGTCAAACCCCAAAATTGGTGTGATTCTGTTCACCGTTTCCTCAAACACTGTGCCGATGCCGGAAACGTTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTATTGTCTACAAAACAGAGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCTATGAATTCTCACGCGCCGGCGTTGTATTCTCTCGCGGTGATACAGTTCAACGGAAGCGGCGGCACAAAAAGCGACAAGGACCTTCGTGCCGGAGTGGCCCTCTGCGCACGCGCTGCTTTTCTCGGTCACATCGATGCGCTGCGTGAGCTGGGTCATTGTTTGCAAGACGGTTACGGCGTTAAGCAGAACGTAGCGGAAGGTCGACGTTTTTTGTTGCAAGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCCGGCTCGAACAATAAGCGTCCGTGGAACCTCCCGGTGCCGCACCCGCGACTCCGTTTGGGGACCGGGACGGGTTGTCCACTGTTGAGTGATTACGGTTGCAACGTGCCGGCGTCGGAGACTCATCCGGCGAGTAAGTTTTTGTCGGAGTGGTTTGAAATTCGGAGCGGGTCACTGGGTCCGGGTATGAGACTGTGTTCACATTGGGGTTGCGGGCGACCCGAGACTAGGAGGCACGAGTTCCGGAGGTGTTCGGTTTGCGGTGTGGTGAATTATTGCTCGCGCGCGTGTCAGGCGCTTGATTGGAAATTCCGGCACAAGGCGGAATGTGCTCCCGTTGAGAGGTGGCTCAATGACGACGGGGAAGAAGTCGCCGGCGAGGACGGCGGCGGCGACGCCGTTATGATGGCTAATAGTTAG 1053 0.5451 MFSDMPFPSKRQKTSPDKTSDFFEYLPDDLLLSILCKLSATASSPSDFINVLVTCKRLNSLGLHSLVLSKASHKTFSVKPQNWCDSVHRFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVAEGRRFLLQANARELAAVLSGSNNKRPWNLPVPHPRLRLGTGTGCPLLSDYGCNVPASETHPASKFLSEWFEIRSGSLGPGMRLCSHWGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLNDDGEEVAGEDGGGDAVMMANS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03186 350 ProSiteProfiles Zinc finger MYND-type profile. 279 321 IPR002893 -
Vian2g03186 350 Gene3D Tetratricopeptide repeat domain 84 217 IPR011990 GO:0005515
Vian2g03186 350 Gene3D - 272 325 - -
Vian2g03186 350 SUPERFAMILY HCP-like 89 204 - -
Vian2g03186 350 FunFam Predicted protein 269 326 - -
Vian2g03186 350 CDD F-box_SF 26 61 - -
Vian2g03186 350 PANTHER MYND DOMAIN-CONTAINING 9 341 IPR044508 -
Vian2g03186 350 SUPERFAMILY F-box domain 10 81 IPR036047 GO:0005515
Vian2g03186 350 SUPERFAMILY HIT/MYND zinc finger-like 275 326 - -
Vian2g03186 350 Pfam MYND finger 282 321 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03186 Vian-Chr2 52292849 52294099 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03186 - - var:108319040 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03186 2 52292849 52294099 Vian1g02668 1 39802127 39803494 PCT