Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02668 ATGAGAACAAGGAGAGGAGCTTGTTATTCTGGAGTAGTATCAAGGATGTGTTCGGATGTGAGGCTTGCCAACAAAAACAAGGATCTGCACATGCATATGCGTGTGCATGTCGCCGGAGACTCCTTTAGTTATAGCCGAAAAAGGCAGAAGAAGACGCCGGAAAAAACCGCTACCGATTACGATTTTTTTGAGTCTTTGCCGGATGACCTTGTAATCTCTATCTTCTGCAAGCTTAGTTCTACCGCCACTAAACCTTCCGATTTTCTCAATGTTTTAACCACGTGTAGGAGATTAAACAAGTTAGCACTACATTCGCTTGTTTTGTCCAAAGTCTCTCCCAGAGCTTTCGCTATTAGAGCCAAAGATTGGTGCGATTCGGCGCACCGTTTCCTCAAACACTGTGCGGATGCCGGAAATGTTGAAGCCTGTTTCACTTTAGGCATGATTCGGTTCTACTGTTTGCAAAACCGAGGGAGCGGCGCGTCGTTAATGGCCAAGGCAGCGATAAACTCCCACGCGCGTGCTCTGTACTCGCTGGCCGTGATTCAGTTCAACGGCAGCGGCGGAACCAAAAGCGACAAGGACTTACGCGCCGGCGTGGCTCTCTGCGCCAGAGCCGCGTTTCTCGGCCACGTCGACGCGCTGCGCGAGCTCGGTCACTGCTTGCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGGCGGCGGTTCCTGGTGCAGGCAAACGCGAGGGAGCTGGCGGCCGTGTTGTCGACGAACGCCGCCGCGCGCCACTGGCTGACGTGCAACCTTCAGCCACAGCTTCGGCAGGGGATCGGATGTCCGTTGCTCAGCGATTTCGGATGTAACGTCCCGACGCCGGAGGTGCATCCGGCAAGCCGGTTCATGGCGGAGTGGTTCGCCGCTCGCGGCGGTTCGCCCGGACAGGGGCTGAGATTGTGTTCGCACGCGGGGTGCGGGCGGCCCGAGTCCAGGAAGCACGAGTTTCGAAGGTGTTCTGTGTGTGGCGCGGTGAATTATTGTTCACGCGCGTGCCAAGCGCTCGATTGGAAGTTCCGGCACAAGGTGGAGTGCGCCCCCGTGGAGCGGTGGCTCGACGAAGACGGCGAAGACATCGGAGACGAGGACAGTGACGGCGAGGTTATGGCTATGGCGGATAGTTAG 1167 0.5681 MRTRRGACYSGVVSRMCSDVRLANKNKDLHMHMRVHVAGDSFSYSRKRQKKTPEKTATDYDFFESLPDDLVISIFCKLSSTATKPSDFLNVLTTCRRLNKLALHSLVLSKVSPRAFAIRAKDWCDSAHRFLKHCADAGNVEACFTLGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTNAAARHWLTCNLQPQLRQGIGCPLLSDFGCNVPTPEVHPASRFMAEWFAARGGSPGQGLRLCSHAGCGRPESRKHEFRRCSVCGAVNYCSRACQALDWKFRHKVECAPVERWLDEDGEDIGDEDSDGEVMAMADS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02668 388 SUPERFAMILY HIT/MYND zinc finger-like 314 364 - -
Vian1g02668 388 Gene3D - 308 363 - -
Vian1g02668 388 PANTHER MYND DOMAIN-CONTAINING 33 375 IPR044508 -
Vian1g02668 388 SUPERFAMILY HCP-like 119 244 - -
Vian1g02668 388 FunFam Predicted protein 307 364 - -
Vian1g02668 388 Pfam MYND finger 319 359 IPR002893 -
Vian1g02668 388 CDD F-box_SF 64 102 - -
Vian1g02668 388 SUPERFAMILY F-box domain 50 119 IPR036047 GO:0005515
Vian1g02668 388 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Vian1g02668 388 Gene3D Tetratricopeptide repeat domain 116 304 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02668 Vian-Chr1 39802127 39803494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02668 - - gmx:100798174 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02668 1 39802127 39803494 Vian1g02668 1 39802127 39803494 ECH
Vian2g03186 2 52292849 52294099 Vian1g02668 1 39802127 39803494 PCT