Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03175 ATGCCTGATCTTACTGTTGGAAAGAAGAGATTTATCCAGCCAAATACGTGTTTCGCCAATTTGACCGATCAAGATAAATCAACTCTTTTACAAAGTGATAATTGTTTCTTCTCGGAGGCACTGAGTGAAGATTATAGCCCAATTCTACCTGGGCTGCCTGATGATGTGGCCGAGTATTGTCTGGCACTTGTGCCTCGTTCGAATTTCCCTGCTATGGGGGGTGTCTGTAAGAGATGGAGATCGTTTATTCAAAGTAAAGCATTCACTACTGTGCGAAAATTGGCTGGAATGCTTGAAGAATGGCTCTATTTCTTAACAAGAGACTGTGAAGAAAAGGAAAGTCACTGGGAGGTTATGGATTGTCTCGGTCGTAAATGCCGATCTCTTCCACCAATGCCGGGTCCAGAAAAGGCTGCATTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTCATGGCTGGTTGTTCAGCTATTGAAGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATGATTCCTGCCTCAACAGCTGGAGCAGTTTGTCGAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTGAATGGCTTGGTTTATGCTGTTGGGGGCTATGGGGAGAATGGAGACAGTTTGTCCAGTGCTGAGGTGTATGATCCAGATACTGACGAATGGACAGTGATAGAGAGCCTTCGCCGTCCGAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTCACCATTGGAAACTCCAAGTTTGTTGATATATACAACCCTGAGAGACACACCTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTAGTAGGAAAAAAGTTGTTCTGCATAGAATGGAAGAACCAGCGGAAGCTGGCTATATTCAGTCCAGAGGACAATTCATGGGAAATGGTTCCAGTTCCATTGACAGGGAGCACCAGTGTTGGTTTTCGGTTCGGGATGCTGGATGGCAAGTTGCTGCTCTTCCCTCTGCTGGCAGAACATGCTCATCAAACATTGTCGTATGATCCAAATGCAGCTCTGGGGTCAGAGTGGCGGACTTGTGACATAAGGCCATCTGGTTTGTGCTTGTATTGTGTAACAATCAAGGCATGA 1158 0.4585 MPDLTVGKKRFIQPNTCFANLTDQDKSTLLQSDNCFFSEALSEDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKRWRSFIQSKAFTTVRKLAGMLEEWLYFLTRDCEEKESHWEVMDCLGRKCRSLPPMPGPEKAAFGVVVLNGKLLVMAGCSAIEGTAFASAEVYQYDSCLNSWSSLSNMNVARYDFACAEVNGLVYAVGGYGENGDSLSSAEVYDPDTDEWTVIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHTWCEIKNGCVMVTAHAVVGKKLFCIEWKNQRKLAIFSPEDNSWEMVPVPLTGSTSVGFRFGMLDGKLLLFPLLAEHAHQTLSYDPNAALGSEWRTCDIRPSGLCLYCVTIKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03175 385 Gene3D - 85 379 IPR015915 GO:0005515
Vian2g03175 385 Pfam Kelch motif 139 185 IPR006652 GO:0005515
Vian2g03175 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Vian2g03175 385 Pfam Kelch motif 239 279 IPR006652 GO:0005515
Vian2g03175 385 SUPERFAMILY Kelch motif 99 343 IPR015915 GO:0005515
Vian2g03175 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Vian2g03175 385 Pfam F-box domain 51 86 IPR001810 GO:0005515
Vian2g03175 385 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Vian2g03175 385 SMART kelc_smart 247 294 IPR006652 GO:0005515
Vian2g03175 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Vian2g03175 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Vian2g03175 385 PANTHER OS02G0202900 PROTEIN 15 378 IPR045887 -
Vian2g03175 385 CDD F-box_AtAFR-like 48 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03175 Vian-Chr2 52235197 52236495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03175 52 230 Miscellaneous Gene Families AT4G33900 27.461 3.36e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03175 - - gmx:100802912 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03175 2 52235197 52236495 Vian1g02678 1 40086380 40088234 PCT