Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02678 ATGCCTGGTTTTGTGGCTGAAAAGAAGAGATATACAGACCCAAATATGTGTTTTCCCAATTTGGCCAACCATGATAAACCAACCCCTACAAAAAGCAATCGTTGTGTGAGGTCTGAGGCTGTAGATGATGATGAAGATTGTAGTAGCCCCATTCTACCTGGGCTGCCTGATGATGTTTCAAAGCACTGCCTTGCACTTGTGCCTCGTTCTAACTTCCCATCCATGGGCGGTGTAAATAAGAGATGGAGAGGCTTTATTCAAAGCAAAGAATTTATAACTGTCCGAAAATTGGCTGGGATGGACGAGGAATGGCTCTATATCTTAACAGCTGGTAGCAAAGGAAAAGGGAGCCATTGGGAGGTCATGGATTGTCTGGGACATAATCGCCGATCTCTTCCATCAATGCCTGGTCCAGCAAAGGCTGGCTTTGGAGTGGTGGTTCTCAATGGAAAGCTCCTTGTTATGGCTGGTTGTTCATCAGTTGACGGAACTGCATCTGTCTCAGAAGAGGTTTATCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAATATGAATGTGGCTCGGTATGACTTTGCTTGTGCTGAAGTGAATGGCTTAGTTTATGCTGTTGGAGGCTACGGCGCAAACGGTGATAGCCTCTCCAGTGCAGAGGTGTATGATCCGGATACCAACAAGTGGACGCCAATAGAAAGCCTCCGTCGCCCAAGATGGGGTTGCTTTGCCTGTGGATTTGAAGGGAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCCAAGTTTGTTGATGTGTACAGCCCAGAGAAGCATGGCTGGTGTGAGATGAAAAATGGGTGTGTGATGGTCACTGCTCATGCAGTGCTGGGAAAGAAGTTGTTCTGTACGGAGTGGAAAAACCAGCGTAAGTTGGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTGACAGGGAGTTCAAGCATTGGTTTTCGGTTTGGGATATTGGACGATAAGTTATTGCTATTCTCACTGGAGGAGGAGCCTTCATATAGGACTTTGTTGTATGATCCAAGTGCAGCACCAGGATCTGAATGGCAGACTTCTGATATAAGACCATCTGGCTTGTGCTTATGCAGTGTAACTATTAGGGCATGA 1167 0.4576 MPGFVAEKKRYTDPNMCFPNLANHDKPTPTKSNRCVRSEAVDDDEDCSSPILPGLPDDVSKHCLALVPRSNFPSMGGVNKRWRGFIQSKEFITVRKLAGMDEEWLYILTAGSKGKGSHWEVMDCLGHNRRSLPSMPGPAKAGFGVVVLNGKLLVMAGCSSVDGTASVSEEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGANGDSLSSAEVYDPDTNKWTPIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYSPEKHGWCEMKNGCVMVTAHAVLGKKLFCTEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDDKLLLFSLEEEPSYRTLLYDPSAAPGSEWQTSDIRPSGLCLCSVTIRA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02678 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Vian1g02678 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Vian1g02678 388 CDD F-box_AtAFR-like 51 95 - -
Vian1g02678 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Vian1g02678 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Vian1g02678 388 Gene3D - 86 386 IPR015915 GO:0005515
Vian1g02678 388 SUPERFAMILY Kelch motif 102 349 IPR015915 GO:0005515
Vian1g02678 388 PANTHER OS02G0202900 PROTEIN 9 384 IPR045887 -
Vian1g02678 388 Pfam Kelch motif 239 283 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02678 Vian-Chr1 40086380 40088234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02678 55 233 Miscellaneous Gene Families AT4G33900 27.179 8.49e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02678 - - gmx:100815474 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02678 1 40086380 40088234 Vian1g02678 1 40086380 40088234 ECH
Vian2g03175 2 52235197 52236495 Vian1g02678 1 40086380 40088234 PCT