Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02707 ATGCTTCCCTCTCACTTTCCTCTTCGTTGGGAAAGCACTGGAGACCAATGGTGGTATGCATCTCCCATTGATTATGCTAGTGCAAATGGGCTCTATGATTTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATCAAGCTCACGTCCCTCCGCCGCATTCGCCGCCTTGAAGCCGTGTGGGACGATGAGTCTAAGTTTGAGGATGTTGCCAAGTGCCGGTCCAAGGTTGCTAGGAATCTCATGCTTGAGTGTGAGATGGGAAAAGGGCACAACTCTCTCATCCGTGCAGGCTATGGTGGATGGCTTCTCTACACTGCTGCTTCGGCTGGGGATGCTGACTTTGTTCTGGAGTTGTTGGGGAGAGACCCTTTGTTGGTGTTTGGTGAAGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCCAGGGGCAAGAACTGTGAGGTCTTCAAGCTCCTGCTTCATTCTGCTCTGTCAAGAAAGGAGAGTCTTGCTGGCAGTGGAGCAGAATTGGAAGAGAAGTTGGATGAAGGGTCTAAGGTTTTCAAGAGGGATGTGATCAACAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTTGGAAATACTGAAACAGCTTCTAGCAAGTGTTTCTGTTTCTCAGATTTTGTCTTATAGAGATGCCCAAGGATCTACTGTCTTGCATGCAGCTGCTGCAAGAGGCCAGGTTGAGATTGTGAGAAATCTAACCGAATCCTATAATATTGTAAACTCAACTGATACTCAAGGAAATACAGCATTACATATAGCTTCTTACAGAGGTTACTTACCTGTGGTAGAGTTTCTGATTGGAGCATCTCCCTCATTAGCAACTTTAACCAATAACTATGGAGATACTTTTCTTCACATGGCAGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGAATGGACAAGCACATTGAGCTGATGAAGCAATTGACAAGTGAAAAGATTGTGAGCATGAAGGACATCATCAATGTCAGGAACAATGAAGGAAGAACAGCTCTTCATGTTGCTGTGATGCATAACATCAAATGTGATGTGGTGGAATTACTGATGTCTGTTTCATCAATTGATTTCAACATTCGTGACACTGATGGCATGACCCCTTTGGATCATATTAGGCAACAAAGATCAAGATCAAGATCAACATCTTCTGACATTTTAATCAAGCACTTAATCTCAGCTGGAGGGATCTCCAATTGTACGGACTACATGACAAGAAATGCTCTTGTTAACCATCTTAGGACTCATGGTATTGGAGCAAGTCCTGGAACATCATTTAGAATACCAGATTCTGAGATATTGTTGTACACAGGCATTGAGAATTCATGTGATACCAATTATGATGAGGCAAGTGTGGAATCAAATTCATGGTCAAGTGAAATAAACAATTATGAGTCACCCAATTCCCCATGCAACAGCAACAATAGTTCTGTTAATTATGGTGCAAGGCGTTTAAAGTTTCTGCTGCAGTGGCATGGGATAAGAGACACGAAAGAAGCAGCCTCGGAGTTGGAAGATGATGTTTCTGAGAATTCTTTTAGTTCAAGGAAAAACTTGGAGGAACTTCCCATCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTATCTTCCAAGTGCTTCAGAGAGAAAATATTTTCATGCAGGCCTAATGCAAGGTGTGATTAAGGTAAAGCCACAAGGCCCTCTACCTGTTCATTCAACTTCTGGTCTTTTTCAAGAACTATCTATCTCTTCTCATGCTTCTAATAACAAGCAAAATGGTGTTGATATAATGAGACCCTCTTGCTCCAATGGATCAAGGGATGGTGGTGGCAGCCTACAGTTGAACTATAAGCGTGGCTCTTTCAATAAGAAAATGATGAACCGCTATTTTTCTTTTGGAGCACACGGCCAGGCTTTGGAAGATGCAAATAGCTGCACAAAGTCAAATCGCAGCTCTAAGAATTTTAGTTCTTTAGTTGCATAA 2034 0.4302 MLPSHFPLRWESTGDQWWYASPIDYASANGLYDLVTELLHLDTNLLIKLTSLRRIRRLEAVWDDESKFEDVAKCRSKVARNLMLECEMGKGHNSLIRAGYGGWLLYTAASAGDADFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFKLLLHSALSRKESLAGSGAELEEKLDEGSKVFKRDVINRAIHAAARGGNLEILKQLLASVSVSQILSYRDAQGSTVLHAAAARGQVEIVRNLTESYNIVNSTDTQGNTALHIASYRGYLPVVEFLIGASPSLATLTNNYGDTFLHMAVVGFRSPGFCRMDKHIELMKQLTSEKIVSMKDIINVRNNEGRTALHVAVMHNIKCDVVELLMSVSSIDFNIRDTDGMTPLDHIRQQRSRSRSTSSDILIKHLISAGGISNCTDYMTRNALVNHLRTHGIGASPGTSFRIPDSEILLYTGIENSCDTNYDEASVESNSWSSEINNYESPNSPCNSNNSSVNYGARRLKFLLQWHGIRDTKEAASELEDDVSENSFSSRKNLEELPIPLRQRYSKMCSLPNNKRTLSIRTYLPSASERKYFHAGLMQGVIKVKPQGPLPVHSTSGLFQELSISSHASNNKQNGVDIMRPSCSNGSRDGGGSLQLNYKRGSFNKKMMNRYFSFGAHGQALEDANSCTKSNRSSKNFSSLVA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02707 677 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 211 - -
Vian1g02707 677 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Vian1g02707 677 ProSiteProfiles Ankyrin repeat region circular profile. 257 278 - -
Vian1g02707 677 SUPERFAMILY Ankyrin repeat 104 381 IPR036770 -
Vian1g02707 677 MobiDBLite consensus disorder prediction 658 677 - -
Vian1g02707 677 Pfam Ankyrin repeats (3 copies) 193 282 IPR002110 GO:0005515
Vian1g02707 677 ProSiteProfiles Ankyrin repeat region circular profile. 224 246 - -
Vian1g02707 677 Gene3D - 12 426 IPR036770 -
Vian1g02707 677 ProSiteProfiles Ankyrin repeat profile. 257 289 IPR002110 GO:0005515
Vian1g02707 677 MobiDBLite consensus disorder prediction 605 626 - -
Vian1g02707 677 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 188 216 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 374 412 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 339 370 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 291 331 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 257 286 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vian1g02707 677 SMART ANK_2a 224 253 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02707 Vian-Chr1 40901701 40904293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02707 192 408 Miscellaneous Gene Families AT2G31820 27.734 2.95e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02707 - - gmx:100791999 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03162 2 52115505 52117892 Vian1g02707 1 40901701 40904293 PCT