Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03141 ATGGCGGCAACCATAGCAGCAACCATGGCCATAGTAAACACCAAGAGCCTAAAACTCCCACTCCCACCTTCAAAACCCACCATTTCTCTCTTTTCCCATCTCAACCTTCCAAAGGGTCTAACCTCCACCGTTAACGCTACCGTGTCATCAACAACATCTTCCATGGCGGGCACTGCAATCGCGGGGGCAGTTTTTTCCACCCTAGGATACTGCGACGCGGCTTTTGCGGCGTCGCAAATAGCCCAAATTGCGGAGGGCGACAACCGTGGGCTTGCGCTGTTGCTGCCGGTGGTTCCCGCCTTAGCGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTGAACCAGGTCAACCGCATGCGAAGCAGCAAGGGGGTCATGGTTGGGCTTGGGCTTGGACTCGGCGCCTCGGGCTTGGTGTGGAGCCCAGAAGCGTCAGCGAGTGAGATGGGTCTGATTGCGGATGCTGCGGCGGGCAGTGACAACAGGGGTCAGCTTCTGCTGTTGGTGGTTGCACCGGCAATTGGGTGGGTTCTGTTCAACATTCTGCAACCTGCACTTAATCAGCTTAACAGAATGAGATCAAAATGA 588 0.5595 MAATIAATMAIVNTKSLKLPLPPSKPTISLFSHLNLPKGLTSTVNATVSSTTSSMAGTAIAGAVFSTLGYCDAAFAASQIAQIAEGDNRGLALLLPVVPALAWVLFNILQPALNQVNRMRSSKGVMVGLGLGLGASGLVWSPEASASEMGLIADAAAGSDNRGQLLLLVVAPAIGWVLFNILQPALNQLNRMRSK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03141 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 195 IPR038760 GO:0009523
Vian2g03141 195 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vian2g03141 195 Pfam Photosystem II protein Y (PsbY) 160 192 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vian2g03141 195 Pfam Photosystem II protein Y (PsbY) 87 119 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03141 Vian-Chr2 51958603 51959190 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03141 K02723 - gmx:100814665 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03141 2 51958603 51959190 Vian2g03141 2 51958603 51959190 ECH
Vian1g03471 1 57289584 57290153 Vian2g03141 2 51958603 51959190 PCT