Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03471 ATGGCAGCAACAATATCAGCAATGGCCATGATCAACGCCAAATGCCTCAACCCCACATCACCAAAATTCCCGACCAAACTCACACCCTCAAAACCTTCTCTCCTTTCTCTTCCCAAGGGCCTTATCGCCTCACCCGAAACCACCAGCCTCTCCGTTCCCACAGCCGTCGCCGGAGCCATATTCACGGCCCTAGGAACCTGCGACGCCGCGTTCGCCGCGCAGCAGATAGCGGACATAGCGGAAGGCGACAACCGCGGCCTGGCCCTGCTGCTGCCCATAATCCCAGCCATAGGGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTCAACCAAATCAACCGCATGCGCAGCACCAAAGGACTCATCATCGGGTTGGGTCTCGGCGGCTTGGCTGGACTCATGGCGGCGCCGCCACATGCAGCTGCAGCTGAAGTCGCGGCGATCGCCGAAGCCGCGAGTGACAACAGGGGGCAGCTTCTGCTGTTTGTGGTGGCACCGGCTATTGGGTGGGTGCTGTTCAACATCTTGCAGCCTGCTCTGAACCAGCTGAACAGGATGAGATCTCGGTGA 570 0.5947 MAATISAMAMINAKCLNPTSPKFPTKLTPSKPSLLSLPKGLIASPETTSLSVPTAVAGAIFTALGTCDAAFAAQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQINRMRSTKGLIIGLGLGGLAGLMAAPPHAAAAEVAAIAEAASDNRGQLLLFVVAPAIGWVLFNILQPALNQLNRMRSR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03471 189 Pfam Photosystem II protein Y (PsbY) 154 186 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vian1g03471 189 Pfam Photosystem II protein Y (PsbY) 83 115 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vian1g03471 189 Hamap Photosystem II protein Y [psbY]. 83 117 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vian1g03471 189 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 188 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03471 Vian-Chr1 57289584 57290153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03471 K02723 - gmx:100779397 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03471 1 57289584 57290153 Vian2g03141 2 51958603 51959190 PCT