Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03129 ATGAATCCGGAGATAGAGACTTGGACAGTTTTGGTTGGTGTTCTGTGCATCTTGGTGTTCATTGTGAAGGAGTTTGTTATGGGGGGCAAGAGTTCTAAAGGAAGTGGTAGGAGGTATGATTATGGTGCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGATACCCTCCACAATCACCATATCCTTCTCATCAAACACCTCGGCACCAGCATGCATCGGCATCAGCTCCATTTTATGATAATGCTCAGCCAAAAAGGAAGTTGAATAGGAAGTATTCAAAGATAGCTGATAACTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGCCAAAACCCGTATGAGCAAGCAATTTCTATTATTGGGAAAACTCTATCAGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGATCAAGATGTGTTTAGTTTCTTTTCGGAAGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTTGCCTCAAACTTGCAGGACCCACTTCATTTGCTCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTGATAATTGCAGATGGACAGGTGACTAGAAGCGTTGACACAGAACATGGCAACTTGAGTCCACAAGAGAAGAACACAATAGATGCAATAGTTAAAGCAAGTGAGTATCCACTATCAATAGTTCTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGTAGATTCAAGCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCATATTGGGCGCAAGGAGGGGTCATTCACCAGACAGGGTTGCTCTACCCCCACCTCTCTATGGTAGGACTTCTTCCAGCATCAGCACAAAATCGACAAGGTCAAACAGTTTTCAGCAGAGGCCACCTACACACACTAGCTATGACAACAGTGTTCACACGGAGGCATCTGCAAGTTCTTTATATGATAATAAGGTTTGCGCGGTTTGCCTTACCAATCCAAAAGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGATTACCTCCAATTCTGTCCCATTTGCCGGAGCACGATCAAAACCAAAATAAGGCTTTACTAG 1389 0.4197 MNPEIETWTVLVGVLCILVFIVKEFVMGGKSSKGSGRRYDYGASSSSWDNNNYGGYPPQSPYPSHQTPRHQHASASAPFYDNAQPKRKLNRKYSKIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLSRYRQIIPCLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTEHGNLSPQEKNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSSRKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVALPPPLYGRTSSSISTKSTRSNSFQQRPPTHTSYDNSVHTEASASSLYDNKVCAVCLTNPKDMAFGCGHQTCCECGDYLQFCPICRSTIKTKIRLY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03129 462 SUPERFAMILY vWA-like 118 301 IPR036465 -
Vian2g03129 462 Pfam Copine 142 355 IPR010734 -
Vian2g03129 462 MobiDBLite consensus disorder prediction 50 81 - -
Vian2g03129 462 SMART VWA_4 117 320 IPR002035 -
Vian2g03129 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 462 IPR013083 -
Vian2g03129 462 CDD vWA_copine_like 96 346 IPR010734 -
Vian2g03129 462 MobiDBLite consensus disorder prediction 50 73 - -
Vian2g03129 462 SUPERFAMILY RING/U-box 412 458 - -
Vian2g03129 462 MobiDBLite consensus disorder prediction 374 403 - -
Vian2g03129 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 456 - -
Vian2g03129 462 PANTHER COPINE FAMILY PROTEIN 1 66 439 - -
Vian2g03129 462 MobiDBLite consensus disorder prediction 362 403 - -
Vian2g03129 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03129 Vian-Chr2 51875437 51878961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03129 K16280 - gmx:100798816 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03482 1 57372694 57379274 Vian2g03129 2 51875437 51878961 PCT