LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g03104	ATGGGGAGAGAAAAAGGAGGGAAGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAAAATGTATGGAACTCCAAACGTCCTAGATCAGATTCAGATCCTATTCCTTTCTCCAACCCCTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGATCAAGGAATCGTGTCATCGCAAGAATGGGATGCATTCGTGCAACTTCTCCGAACTCCTTTGCCCGCAGCTTTCAGGATCAATTCCACTAGCCGGTTCTGTGAGGATATTCGGTCTCAACTAGAGAATGATTTTGTGCACTCTCTTCAGGCTGAGGTTGTGGAAGGGGATGATACAGAGGCTATTTTACCTTTGCCATGGTATCCTGATAATCTTGCTTGGCATTCGAATTTTTCGCGAAAGCAGCTCAGGAAGAACCAAACACTCGGGAGGTTTCATGAATTCTTAAAGATAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTACCTCCCCTGTTTTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCGCCAGGTTCAAAAACATTTCAATTGCTTGAGATTTTACATCATTCAACTAAAGTAGGATCTCTGCCCGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGCAATCTTCTCATTCACCAAACCAAACGGATGTGCACAGCCAACCTGATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTAGAAAAACATTATGATAAAATGGAGCTAGATCAAGAAGCCCAGTTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGAGATGGCACCCTTCGTAAGGCCCCTGATCTGTGGAGGAAATGGAACACAGGGACTGGAAATGGCCTTCATAACCTACAAGTTCTAATTGCAATGCGAGGTGCATCTTTACTTAAAGTTGGTGGAAGGATGATTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCGGTTGTTGCAGAGGTTTTGCGAAGGTGTGGAGGATCCATCGAACTTGTAGATGTCTCTAGTGAACTTCCCCAACTCACTCGTCGACCAGGTCTTAAGAGATGGAAGGTATGTGACAAAGGCAAGTGGTTCATCTCCAGCAAAGATGTTCCCAAGTTTCGTAGAAATGTAGTTCTTCCCAGCATGTTTCCAAATGGCAGAAGCTATCAGGATGTTGGTGATAGTAATTGTAATATCATCATGGAAGGTGATATTAATACTGATGATGCTAAGGGACATATCGAAGATAATACCCAAGCAATGGAGAATCCTGCTATGCTCGAATTTACTGAGGAAGATTCTGATTTCCCACTAGAGCGGTGCATGAGGTTTGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTTCTGCAGAAAGTTTCTGCTCTTCCTGCAATCCAGGTAAAACCTAGAAAAGCAGTTGGGAAACAGGTTGACACAGCAAACCAAGGCAATGAGGATGCACACGAACTGCATGCTAATCCATTATTGGAAAATATATCTGAAGGAAATTCAGAGGCTAATGTAAATGAAAATGAACCTAATGAAACAGATTTGAAGGTTAATTCTGTTGCATGTGAAGAAACGGATTTCAAGGAAGCCCAAGAACCCTGCAGTATAGAAATCATAACAAAGAATACTCCAGGCAAAAGGAAACTGCAGTTTCAAGGAAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGGAATTATTAACAGCATAAAGGCATTTTATGGCATTGATGATCAATTTCCATTTAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATATATCCAAGTCAGTCAAAGATGTTCTGGAGTTGAACTTCTCAGTGGGGCAGCAACTTAAAATAACTTCTGTTGGTCTGAAGGTTTTTGAAAGACAAACTTCATGTGAAGGAAGGTCTGCACAATGTTCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCTCCAAACAGATTCTAAGTGCATCTGTAATAGATTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGATGCCAAGTTCGGAGAAAGTGCTGCAAACCTAATGCCCGGCTGTTGCGTGATAGTTCTGGGTGAAGGTAGCAGAGCTGCTGCAGGGACCCTCCAAGTGGATGAGTCAACTGTAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTCATGGTTGGTGCATTGGAATGCCAAGAACTGCTCCAACGGCTTTTAATGCGTCTAGATACACAAACAGAAAAGGACTCCTCCATGCATGAGGACCAACCGTCTGGTACCAAGGGAGATGAAGCACAAGTGGCAAACGGTAAAAATGAAGAAGCGGGAGTTACTGGGTGTTAG	2463	0.4231	MGREKGGKKSRTQRKHFQESRENVWNSKRPRSDSDPIPFSNPFATQNLAFDHYYKDQGIVSSQEWDAFVQLLRTPLPAAFRINSTSRFCEDIRSQLENDFVHSLQAEVVEGDDTEAILPLPWYPDNLAWHSNFSRKQLRKNQTLGRFHEFLKIENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHHSTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLEKHYDKMELDQEAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGASLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLTRRPGLKRWKVCDKGKWFISSKDVPKFRRNVVLPSMFPNGRSYQDVGDSNCNIIMEGDINTDDAKGHIEDNTQAMENPAMLEFTEEDSDFPLERCMRFVPHDQNTGAFFIAVLQKVSALPAIQVKPRKAVGKQVDTANQGNEDAHELHANPLLENISEGNSEANVNENEPNETDLKVNSVACEETDFKEAQEPCSIEIITKNTPGKRKLQFQGKWRGIDPVVFFKDEGIINSIKAFYGIDDQFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFSVGQQLKITSVGLKVFERQTSCEGRSAQCSFRITSEGLPLILPHISKQILSASVIDFKHLLQYRAVKFADFVDAKFGESAANLMPGCCVIVLGEGSRAAAGTLQVDESTVAIGCWKGRASLTVMVGALECQELLQRLLMRLDTQTEKDSSMHEDQPSGTKGDEAQVANGKNEEAGVTGC	820

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g03104	820	MobiDBLite	consensus disorder prediction	786	820	-	-
	Vian2g03104	820	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	68	480	IPR001678	GO:0008168
	Vian2g03104	820	ProSitePatterns	NOL1/NOP2/sun family signature.	271	282	IPR018314	GO:0003723\|GO:0008168
	Vian2g03104	820	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	50	480	IPR029063	-
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	129	150	IPR023270	GO:0016428
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	647	659	IPR023270	GO:0016428
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	356	375	IPR023270	GO:0016428
	Vian2g03104	820	MobiDBLite	consensus disorder prediction	1	29	-	-
	Vian2g03104	820	Gene3D	Vaccinia Virus protein VP39	46	388	IPR029063	-
	Vian2g03104	820	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	45	386	-	-
	Vian2g03104	820	MobiDBLite	consensus disorder prediction	786	800	-	-
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	183	193	IPR023267	GO:0001510
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	272	284	IPR023267	GO:0001510
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	322	338	IPR023267	GO:0001510
	Vian2g03104	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	462	479	IPR023267	GO:0001510
	Vian2g03104	820	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	13	791	IPR023267	GO:0001510
	Vian2g03104	820	Pfam	16S rRNA methyltransferase RsmB/F	173	348	IPR001678	GO:0008168
	Vian2g03104	820	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g03104	Vian-Chr2	51659537	51665815	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g03104	K15334		-	gmx:100808598	1373.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g03515	1	57812505	57823110	Vian2g03104	2	51659537	51665815	PCT