Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03515 ATGGGGGGTGGTGGGAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCATTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCTGATCCTGATCCTTCTTCAACAGAAAACAATCCTTCATGGACTCCTTTCGCCACCGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGAATAGTCGAACCGCAACAGTGGGAGCAATTCGTTGCTGTTCTCCGAACTCCATTGCCTGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAACTGGAGAATGATTTCGTGCATTCTCTTCGCGACGAGGTTGGTGAAGGGGGTGAGACTGAGGCTATTCGGCCGTTGCTGTGGTATCCTGGGAATTTTGCTTGGCATTCAAATTTTTCTAGGATGCAGCTTAGGAAGAATCAAACGCTTGAGAGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCTCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAAGTAAATCAGGATCACTGCCTGATGGAATGGTTACAGCAAATGATCTTGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAATCTGATTGTTACAAATCATGAAGCACAAAACTTCCCTGGATGCCGATTAAACAGAAATTATGAAAAGATCGAGTTAGATCACAATATTGGCCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTCTGGAGAAAATGGAACACAGGGATGGGACATGGTCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTATATCTTTACTCAAAATTGGTGGAAGAATGGTTTATTCAACTTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGGAGGTGTGGAGGTTCTATTGAACTTGTTGATGTTTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAAATGGAAGGTATATGACAAGGGCTCCTGGTTTGTCTCGTATAATGGTGTTCCTAAGTTCCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGAAGAGGACATCGTGATGTTGTGGATAGTAGCTGTAATGTTAACGTAGAGGTTGGTACTAATGGTATTAATGAAAACGTTGGAGATATTAATGAAGACGCCGGAGATGGTGTTCAACCAGTACTGAATCCTGTGATGTCTGAATCTGTTGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGTATGAGGATAGTGCCTCATGATCAGAATACTGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCTCCTTTGCCAGTAATTCCAGAAAAACCAAAAGTAAAAATTCATGAGCAATATGTAGATCCAGCAAGCCAGAGTCTTAATGATGCGCAAGTACAACAGATAACTTCACCGGAAAATGCACATGAAGAAGACTTCAAAGCAGTTTCAGAGGAAAATGCAGATGACAACGAACCCAATACCCAAGATATGGAAGATGATCCTGTTGCATGTGAAGAACAAAAAACTAAGGAAAATCTAGAGCCTGATAATGTGCAAAACACGATGAAGAGGGTTCCAGGAAAGAGAAAGCTACAAATTCAAGGAAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAATAATAATCAATAGTATAAGGGATTTTTATGGAATTGACGAGCGTTTTCCATTCAATGGTCACCTTGTTACAAGAAATAGTGATGCAAATCATGTGAAAAGAATTTATTATATCTCGAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTAGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCCGCAGACTTCAAGCATCTTCTGATGAACAAAGAAGTAAAATTTGAAGATTTTACTGATGCCAAGTTTGGTGAAAAGGCAGCAAACCTATTGCCTGGCTGCTGTGTGGTAATTCTGAGTTTAGGAAACACAACTGCTGTAGAGTCTCTTCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAAGGAAGAGCGAGGTTGTCTGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACAATGTAAATGGTTCCTCTGGGCATGTCCACAAATCCTCTAATGATGAGGAAGAAATACGACCTGTGCAAGATTAA 2463 0.4182 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSTENNPSWTPFATENAAFDFYYKEQGIVEPQQWEQFVAVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVGEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKSGSLPDGMVTANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNYEKIELDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGISLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLIRRPGLKKWKVYDKGSWFVSYNGVPKFRRSVILSSMFPSGRGHRDVVDSSCNVNVEVGTNGINENVGDINEDAGDGVQPVLNPVMSESVEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPVIPEKPKVKIHEQYVDPASQSLNDAQVQQITSPENAHEEDFKAVSEENADDNEPNTQDMEDDPVACEEQKTKENLEPDNVQNTMKRVPGKRKLQIQGKWRGVDPVVFFKDEIIINSIRDFYGIDERFPFNGHLVTRNSDANHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPADFKHLLMNKEVKFEDFTDAKFGEKAANLLPGCCVVILSLGNTTAVESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDNVNGSSGHVHKSSNDEEEIRPVQD 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03515 820 Gene3D Vaccinia Virus protein VP39 50 390 IPR029063 -
Vian1g03515 820 MobiDBLite consensus disorder prediction 528 542 - -
Vian1g03515 820 MobiDBLite consensus disorder prediction 17 33 - -
Vian1g03515 820 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 489 IPR029063 -
Vian1g03515 820 MobiDBLite consensus disorder prediction 512 556 - -
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase signature 471 488 IPR023267 GO:0001510
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase signature 326 342 IPR023267 GO:0001510
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Vian1g03515 820 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 489 IPR001678 GO:0008168
Vian1g03515 820 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 48 390 - -
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 360 379 IPR023270 GO:0016428
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Vian1g03515 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 660 672 IPR023270 GO:0016428
Vian1g03515 820 MobiDBLite consensus disorder prediction 512 527 - -
Vian1g03515 820 Pfam 16S rRNA methyltransferase RsmB/F 176 352 IPR001678 GO:0008168
Vian1g03515 820 MobiDBLite consensus disorder prediction 1 45 - -
Vian1g03515 820 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 801 IPR023267 GO:0001510
Vian1g03515 820 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03515 Vian-Chr1 57812505 57823110 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03515 K15334 - gmx:100808859 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03515 1 57812505 57823110 Vian1g03515 1 57812505 57823110 ECH
Vian1g03515 1 57812505 57823110 Vian2g03104 2 51659537 51665815 PCT