Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02837 ATGTCTTCAACCTTCTCATCCCTCGTTGCCGTCTTCCTCCTCCTTTTTCTGTTCCACTACACGTGCCAGGCACGTGAAGCATTCGCCTGTGACCCTAAAAATGCTGCCACCAAGAACTTTCCTTTTTGCATGGTCTCAGTGGCGATACCGGAGAGGGTGAAGGACCTCATCGGAAGGTTGACGCTTGAGGAAAAGGTTAGGCTTCTGGTGAACAATGCCGCGGCGGTTCCGCGGTTGGGGATGAAAGGGTACGAGTGGTGGTCGGAGGCACTGCACGGCGTTTCTAATGTGGGTCCCGGAGTCAAGTTTAATGCAGAATTCCCCGGCGCGACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAACGCTTCACTCTGGGAGTCAATCGGACGGGTTGTATCAGACGAGGCAAGGGCAATGTACAACGGTGGAACAGCAGGTCTCACCTATTGGAGTCCAAACGTGAACATTTTCAGGGACCCAAGGTGGGGCCGCGGACAGGAAACTCCCGGTGAGGACCCTGTGCTGGCCGGTATCTATGCTGCTAGTTACGTTAGAGGACTGCAGGGAACCCACCCTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTCACGGCTTATGACCTCGATAATTGGAACGGCATGGATCGATTCCACTTTAATGCACAGGTAAGTAAGCAGGACATAGAGGATACATTCGACGTGCCATTCAGGATGTGTGTTAGCGAAGGGAAAGTAGCGAGTGTGATGTGTTCTTACAATCAAGTGAATGGGGTTCCCACTTGTGCGGACCCCAACCTCCTCAAGAAAACAGTTCGTGGTCTGTGGGAACTTGACGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTATAGTAATCAACATTATGCACCCACCCCCGAAGAAGCTGCCGCTGATGCCATTAAAGCAGGCCAGTCTCACTCTATTTACCAACCTATATTTATAAAACATCTGCTTCAACCCACCAAATTCAGATACATTTTGTTTTTTTACCATGTCACAGGTTTAGATTTAGACTGTGGTCCCTTCCTGGCCGTGCACACGCAGGATGCTGTCAAAAAAGGCTTGCTAAGCGAAGCTGACGTGGACGGGGCCCTGGTGAATACACTGACGGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCATCGGCCCAAGAATATGGCAAATTGGGTCCAAACGACGTGTGCAAACCGGCCCATCAACACCTGGCTCTCGAAGCTGCAACACAAGGAATTGTCCTTCTTAAGAACACCGGTCCTGTTTTGCCTCTCTCCCAACAGCGTCATCGTACCGTGGCTGTCATTGGGCCCAATTCCAAGGCCACTGTTACAATGATTGGAAACTATGCTGGTATTGCTTGTGGATACACCAGCCCCTTACAAGGAATAGGAAGATATGCCACGACTGATCATCAGTTGGGTTGTGAAAATGTAGCTTGTAAGAATGATAAACTTTTTGGGCCCGCCATAAACGCAGCCCGTCAAGCGGATGCAACCGTTCTGGTTATGGGCTTGGACCAGTCCATCGAAGCTGAAACAGTGGACAGGACTGGTTTGCTTTTGCCGGGGCGTCAACAGGACCTTGTTTCAAAAGTTGCAGCTGCCTCAAAGGGACCGACCATTCTGGTACTAATGTCTGGTGGGCCTGTTGACATCACTTTTGCGAAGAATAACCCTCGGATCGTGGGCATCCTCTGGGCCGGTTATCCGGGCCAAGCCGGTGGTGCCGCCATTGCAGATATACTGTTTGGAACTTCTAGCCCAGGGGGAAAGCTTCCGATGACATGGTACCCAGAAGAATACCTGAGAAAGTTGCCGATGACGAATATGGCAATGCGAGGAAGTGAATCGGCAGGGTACCCAGGAAGAACGTATAGATTCTACAAGGGTGAAGTGGTGTATCCATTTGGGCACGGGTTAACTTACACTCACTTTGTCCACACACTGGCAAGTGCTCCCACAGTGGTGTCAGTTCCCGTGAACGGTCACCGGCGTTCGAATGCCAGCGACATTTCGAACAGGGCCATTAGAGTGACTCATGCGCGGTGTGACAACCTCTTCATCACCCTACAGGTGGACATTAAAAACGTGGGGTCCAGAGATGGCACGCACACGTTGGTAGTGTTCTCTGCTCCACCTGCCGCTGCTGGGCATTGGGCACTGGAGAAGCAGCTTGTGGCCTTCGAGAAAGTCCATGTTACTGCCAAGGCTCAACACAGAGTCGGAGTCCATATTCACGTCTGCAAACTCCTGAGTATAGTGGATAAGTCTGGGATCAGGAGAATCCCGTTGGGGCTACACAGTTTTAACATCGGCGACGTTAAACATTCCGTCTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA 2412 0.5108 MSSTFSSLVAVFLLLFLFHYTCQAREAFACDPKNAATKNFPFCMVSVAIPERVKDLIGRLTLEEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNVGPGVKFNAEFPGATSFPQVITTAASFNASLWESIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGIYAASYVRGLQGTHPNRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWELDGYIVSDCDSVGVFYSNQHYAPTPEEAAADAIKAGQSHSIYQPIFIKHLLQPTKFRYILFFYHVTGLDLDCGPFLAVHTQDAVKKGLLSEADVDGALVNTLTVQMRLGMFDGEPSAQEYGKLGPNDVCKPAHQHLALEAATQGIVLLKNTGPVLPLSQQRHRTVAVIGPNSKATVTMIGNYAGIACGYTSPLQGIGRYATTDHQLGCENVACKNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTSSPGGKLPMTWYPEEYLRKLPMTNMAMRGSESAGYPGRTYRFYKGEVVYPFGHGLTYTHFVHTLASAPTVVSVPVNGHRRSNASDISNRAIRVTHARCDNLFITLQVDIKNVGSRDGTHTLVVFSAPPAAAGHWALEKQLVAFEKVHVTAKAQHRVGVHIHVCKLLSIVDKSGIRRIPLGLHSFNIGDVKHSVSLQAAALGIIKS 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02837 803 FunFam probable beta-D-xylosidase 7 52 333 - -
Vian2g02837 803 Pfam Glycosyl hydrolase family 3 C-terminal domain 425 655 IPR002772 GO:0004553|GO:0005975
Vian2g02837 803 Gene3D - 410 656 IPR036881 GO:0004553|GO:0005975
Vian2g02837 803 Gene3D - 52 401 IPR036962 GO:0004553|GO:0005975
Vian2g02837 803 PRINTS Glycosyl hydrolase family 3 signature 200 216 IPR001764 GO:0004553|GO:0005975
Vian2g02837 803 PRINTS Glycosyl hydrolase family 3 signature 113 132 IPR001764 GO:0004553|GO:0005975
Vian2g02837 803 PRINTS Glycosyl hydrolase family 3 signature 274 292 IPR001764 GO:0004553|GO:0005975
Vian2g02837 803 SMART Fn3_like_2 717 788 IPR026891 -
Vian2g02837 803 FunFam probable beta-D-xylosidase 2 410 656 - -
Vian2g02837 803 Gene3D Immunoglobulins 679 799 IPR013783 -
Vian2g02837 803 PANTHER SUGAR HYDROLASE-RELATED 23 791 IPR044993 GO:0009044|GO:0045493
Vian2g02837 803 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 425 658 IPR036881 GO:0004553|GO:0005975
Vian2g02837 803 SUPERFAMILY (Trans)glycosidases 41 424 IPR017853 -
Vian2g02837 803 Pfam Glycosyl hydrolase family 3 N terminal domain 108 317 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02837 Vian-Chr2 49252312 49256906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02837 9 803 Glycoside Hydrolase AT1G02640 69.560 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02837 - - gmx:100789316 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02837 2 49252312 49256906 Vian2g02837 2 49252312 49256906 ECH
Vian2g02837 2 49252312 49256906 Vian3g01601 3 17581567 17583843 PCT