Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02617 ATGGCGGAGTTGGAAGAAAGCAGCAGTAAGAGAGGAGGAAGATGGTGTCTGAAGGGAATGACGGCTCTGGTCAGTGGTGGCACTCGTGGGATCGGGCACGCCATTGTGAGTGACTTGGCCGCGTTTGGCGCCGCTGTGCACACTTGTTCCAGGACCCAAACAGAGCTCAACAAGTGCTTAGAAGAATGGCAGAGTGAAGGCTTTCAGGTCACTGGATCGGTGTGTGACGTGTCCTCGCCACACGACAGAGAGAAGCTTCTTCAGAAAGTTGCATCCATCTTCAACGGAAAGCTTAACATCTATGTAAACAACGTTGGAACAAACCTCAGAAAACCAACGATTGAGTACAGTGCTGAAGAATATTCAGAGCTGATGACAGTTAATTTAGACTCATCATTTAATCTGTGTCAACTTGCGTACCCTCTTCTCAAAGCATCTGGAAAGGGATGCATTGTGTTCCTTTCTTCTGTTGCTGGTGTCACCAGCATGGGTACTGGATCTGTTTATGCAGCAAGCAAAGCCGCAATTAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCAAAAGACAACATAAGAAGCAACTGTGTTGTACCATGGACCACCAGAACCTCACTTGTCCAACATCAGCTGCTCCAAAATCAAGCTTTTGTGGATGATGTGATGTCACGTACCCCTCTTAAGCGCATCGCAGAACCGGAAGAAGTGTCATCTTTGGTGACTTTCCTCTGCTTGCCTGCTGCATCGTATATCACTGGACAAGTTATTTGTGTTGATGGAGGAGTCACTGTTAATGGATTTCAACCCAGCATTAGAATTACTTGA 825 0.4642 MAELEESSSKRGGRWCLKGMTALVSGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELNKCLEEWQSEGFQVTGSVCDVSSPHDREKLLQKVASIFNGKLNIYVNNVGTNLRKPTIEYSAEEYSELMTVNLDSSFNLCQLAYPLLKASGKGCIVFLSSVAGVTSMGTGSVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWTTRTSLVQHQLLQNQAFVDDVMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGVTVNGFQPSIRIT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02617 274 FunFam Short-chain dehydrogenase reductase 8 268 - -
Vian2g02617 274 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Vian2g02617 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 264 IPR036291 -
Vian2g02617 274 PANTHER TROPINONE REDUCTASE 14 266 IPR045000 GO:0016491
Vian2g02617 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Vian2g02617 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Vian2g02617 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vian2g02617 274 Pfam Enoyl-(Acyl carrier protein) reductase 28 263 - -
Vian2g02617 274 Gene3D - 3 267 - -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Vian2g02617 274 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02617 Vian-Chr2 46899327 46903875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02617 14 269 Miscellaneous Gene Families AT2G29290 60.853 1.06e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02617 K08081 - gmx:100791265 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02617 2 46899327 46903875 Vian2g02617 2 46899327 46903875 ECH
Vian2g02617 2 46899327 46903875 Vian2g01278 2 26342827 26351374 ECH