Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01278 ATGGCAGAAACAAAGTTGAGTTGCTTCAAAGACAAGAGATGGTCACTCCATGGCATGACAGCTCTAGTTACAGGAGGAACCCGTGGCATAGGGCATGCAATTGCAGAAGAGTTAGCAGAATTTGGCGCAGCTGTGCATGTATGTGCCCGTAAACAACAAGATATTGATCGGTGTTTGGAAGAATGGAATAACAAAGGACTTCGCATAACAGGGTCAGTGTGCGATGTACAATCTCATGACCAACGTAAAAAATTGATGGAAAATGTTGCATTCATTTTCCAGGGAAAACTCAACATTCTGATAAACAACGCAGGAACAGCTACAACTAAGAGTCATTTAGATCATACTGCAGAAGATGTAGCAGTAATTATGGGTACAAATTTTGAGGCATGTTTCCATCTATGTCAACTAGCACACCCACTTCTGAAAGCATCTGGGTACGGCAACATAGTATTCATATCCTCTATTTCAGGTCTGAAAGCTTTTCCTCTTTGTACTGCTTATGCTGCCTCCAAAGGAGCTTTGAATCAATTCACAAAGAACATAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTGGCACCTGGACCTGTTAAGACTGAACTTTTGGATTCTATCATGGAAACTAGTGATATTGAGAAGCAAGTGGAGGCTTTGGTGTCTCTATCACCAGCTGGTCGGATTGGAGAACCTAAGGACATATCAGCCATGGTTGCTTTCCTTTGCCTTCCAGCTGCTTCATACATCACTGGACAAATCATAACAGTGGATGGGGGTTCTATAATTTAA 798 0.4198 MAETKLSCFKDKRWSLHGMTALVTGGTRGIGHAIAEELAEFGAAVHVCARKQQDIDRCLEEWNNKGLRITGSVCDVQSHDQRKKLMENVAFIFQGKLNILINNAGTATTKSHLDHTAEDVAVIMGTNFEACFHLCQLAHPLLKASGYGNIVFISSISGLKAFPLCTAYAASKGALNQFTKNIALEWAKDNIRANAVAPGPVKTELLDSIMETSDIEKQVEALVSLSPAGRIGEPKDISAMVAFLCLPAASYITGQIITVDGGSII 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01278 265 FunFam Short-chain dehydrogenase reductase 5 265 - -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vian2g01278 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vian2g01278 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vian2g01278 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vian2g01278 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vian2g01278 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 263 IPR036291 -
Vian2g01278 265 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Vian2g01278 265 Pfam Enoyl-(Acyl carrier protein) reductase 27 262 - -
Vian2g01278 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vian2g01278 265 Gene3D - 2 265 - -
Vian2g01278 265 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01278 Vian-Chr2 26342827 26351374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01278 11 262 Miscellaneous Gene Families AT2G29290 53.175 2.75e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01278 K08081 - gmx:100306108 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01278 2 26342827 26351374 Vian2g01278 2 26342827 26351374 ECH
Vian2g02617 2 46899327 46903875 Vian2g01278 2 26342827 26351374 ECH