Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian2g02611 | ATGAATGGCGAGGGAAGTGAAGCAATGCAAGTGGAGAAGGAGATGTTGGTGTACATGTGGGGTTACCTCCCCGGAGCTCTGCCGCAGAGGACGCCGCTGCTGACGCCCGTCCTCGTTAGGGTTCCGCCGTCAGGTTACTCTTGGAGTGATGTTTGCGGCGGCGGTTGTGGATTTGCCATGGCTATGTCTGAGCCCGGAAAGCTCATAACATGGGGTTCATCAGATGATTTAGGCCAAAGCTATGTTACGTCTGGCAAACATGGGGAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCGCATTGTGTTGCTGTCACTGATTGTGGAGAAGTTTATACATGGGGATGGAGGGAATGTGTCCCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTGAACCCTGAAAAGGATGTACCGGGAAGGCAAACCTTATTCTTGACGGAGCAAGAATGTTTTGCTACAGTAAGCCCTCATTCTCAAGGCTCAAAGTCTACTGGAGGAACTGCTTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTGTCTTCATCAAAGCAAACAGCTGAAACCTCTTCTTCCAGTGATGATACTCTGATAGCGTTGCCGTGTCTTGTCACACTAAACCCAGGCATAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGTCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATACCTCTTCTTATGGTAAAGATATGCCGTTGTCACTGGCTCGAGGAAGCATGAGTTCAGATGGACAAAATTTCAGAGTACCAGGAACTTGTATAAAGGCAATTGCCTGCGGAGGTCGACACAGTGCAGTAATAACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGTCCGACTTGTGTATCTTCCTTAATGGGTATTCGAATAGAGGGGGTTGCTGCAGGACTGTGGCACACTGTGTGTACATCTGCTGATGGTGATGTTTATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGCTCTGACCAAGCTGAGACTATACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTCAACGTTAAGAGGATATCTTGTGGGGCGCGCCACTCTGCACTAATAACAGATACGGGAAAAGTCTTCTGCTGGGGGTGGAACAAGTATGGACAGTTGGGCCTTGGGGACGTGATTGACCGTAACATCCCTTCTGAAGTCACCATCGAAGGTTGCTTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACTTGA | 1446 | 0.4896 | MNGEGSEAMQVEKEMLVYMWGYLPGALPQRTPLLTPVLVRVPPSGYSWSDVCGGGCGFAMAMSEPGKLITWGSSDDLGQSYVTSGKHGEIPEPFPLPTEVTIVKAAAGWAHCVAVTDCGEVYTWGWRECVPSGKVFGESLTGVNPEKDVPGRQTLFLTEQECFATVSPHSQGSKSTGGTASSTSGEESTKRRRVSSSKQTAETSSSSDDTLIALPCLVTLNPGIRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINTSSYGKDMPLSLARGSMSSDGQNFRVPGTCIKAIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLMGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETIPRLLDCPSLENVNVKRISCGARHSALITDTGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCLAKNVACGWWHTLLLAESPT | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian2g02611 | 481 | MobiDBLite | consensus disorder prediction | 166 | 185 | - | - | |
| Vian2g02611 | 481 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 415 | 425 | IPR000408 | - | |
| Vian2g02611 | 481 | Gene3D | - | 285 | 480 | IPR009091 | - | |
| Vian2g02611 | 481 | Gene3D | - | 8 | 200 | IPR009091 | - | |
| Vian2g02611 | 481 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 428 | IPR000408 | - | |
| Vian2g02611 | 481 | SUPERFAMILY | RCC1/BLIP-II | 16 | 479 | IPR009091 | - | |
| Vian2g02611 | 481 | Gene3D | - | 201 | 283 | IPR009091 | - | |
| Vian2g02611 | 481 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 309 | 319 | IPR000408 | - | |
| Vian2g02611 | 481 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 226 | 255 | - | - | |
| Vian2g02611 | 481 | PRINTS | Chromosome condensation regulator RCC1 signature | 229 | 245 | IPR000408 | - | |
| Vian2g02611 | 481 | PRINTS | Chromosome condensation regulator RCC1 signature | 364 | 382 | IPR000408 | - | |
| Vian2g02611 | 481 | PRINTS | Chromosome condensation regulator RCC1 signature | 102 | 115 | IPR000408 | - | |
| Vian2g02611 | 481 | PRINTS | Chromosome condensation regulator RCC1 signature | 424 | 445 | IPR000408 | - | |
| Vian2g02611 | 481 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 10 | 477 | - | - | |
| Vian2g02611 | 481 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 229 | 239 | IPR000408 | - | |
| Vian2g02611 | 481 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 243 | 322 | IPR000408 | - | |
| Vian2g02611 | 481 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 323 | 370 | IPR000408 | - | |
| Vian2g02611 | 481 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 425 | IPR000408 | - | |
| Vian2g02611 | 481 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 429 | 476 | IPR000408 | - | |
| Vian2g02611 | 481 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 429 | 479 | IPR000408 | - | |
| Vian2g02611 | 481 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 66 | 118 | IPR000408 | - | |
| Vian2g02611 | 481 | MobiDBLite | consensus disorder prediction | 166 | 206 | - | - | |
| Vian2g02611 | 481 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 323 | 374 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian2g02611 | Vian-Chr2 | 46817685 | 46822919 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian2g02611 | - | - | gmx:100778841 | 864.759 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian2g02611 | 2 | 46817685 | 46822919 | Vian2g02611 | 2 | 46817685 | 46822919 | ECH | |
| Vian2g02611 | 2 | 46817685 | 46822919 | Vian7g01633 | 7 | 25593745 | 25598817 | ECH | |
| Vian2g02611 | 2 | 46817685 | 46822919 | Vian7g01633 | 7 | 25593745 | 25598817 | PCT |