Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02598 ATGGATGTTTTTCCCAGCAAGAACGAAACTTCTCAAAACAAAACAGATGGGGTTTCCTCTTGTCTCACCGATTCCACTGCAGACTCCAGGGAAACCAGTTTCTGTGCATCCACTTCTTCAGTTACCGTTGAAGAAGCAAAGGCAAAAGGCTCTTCTTCACCCGCTCCTCTTGGTTGGCCCATTCTCAAGGCTACACTCTCCAAGCGCTCTAATTCACATGAAAAAGAAAACGAACATAAATCTCACTTGGAAGACACTAAGCTTACTCGTATTGGTTTGAAGCTGTCAGAAGTTGACATGATGAAGGAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGTAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGTGCAACTGTATTTGGGCAATTATGGAGACTAGAACCTTTACCTTCTGAGAAGAAAGAAATGTGGCAGAGAGAGGTGGAGTGGCTTGTTAGTGTTAGTGATTACATTGTTGAGTTGATGCCTTCTTGGCAAACATTTCCTGATGGGAGTAAACTCGAGGTAATGACTTGCAGGCCTAGGACAGATATTTTCATAAACCTTCCAGCTCTTCGCAAACTTGACAACATGCTTCTCGAAATTTTAGATAGTTTCACTTCTACAGAGTTCTGGTATGTAGACCAAGGCATTGTAGCCGCAGAAGCAGATTGTTCAGCCTCTTTTCGCAAAACAATTCAGCGGCAAGAAGAAAAGTGGTGGCTTCCCGTACCTCGTGTCCCCCCTGCAGGACTCAGTGAAGACTCAAGAAAACAGTTGAATCACTCTCGAGAATGTGCAAACCAAATACTAAAAGCAGCCATGGCTATCAACAACATTGCTTTGGCTGACATGGAAGTTCCTGAGTCATATTTGGAAGTTCTTCCTAAGAATGGAAGAACTTGCTTGGGGGATTTTATTTACCGTTACATAACATCAGAGCAATTCTCCCAAGAGTACCTTCTTGATTGCTTAGACATATCCTCTGAACATGTTGCATTAGAGATTGCAAACCGTGTGGAAGCAGCAATTTATGTATGGCGCCGAAGAGTTCACTCTCGGTTCTTACCATCCCCAAAGCCCAACCGTTCTACCCCAAAATCATCATGGGAAATAGTCAAGGACTTCATGGTTGATGGAGATAAGAGAGAATTGCTAGCAGATAGAGCTGAAAGCATTCTAGTTTCCCTGAAGCAGCGGTTCCCAGGCTTAAGCCAAACCACCCTTGATACCAGCAAGATCCAGTGCAATAAGGATGTGGGGAAATCCGTGCTAGAGAGCTACTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTAGCTCGCATTGATGATTTGCTATATGTGGATGACTTGACCAAACAGTCAGAGAGGTTTGCATTAGTTCCTACTACTATTACTACCACTACAGTTAAGGTGGTTTCTCAGCAAAAGAAGGTTACGCGTCCACATTCGGTGTCTGTCTCAGGCACTGTTACTCCAAACAAAGCAGCATTTGGCAGACCAAGCTTTTCACCAGCTTCCGTGCCACTCATTAGTCCTGCAAGAGGGGAGAGAACTCATTTCCTCCATAACAACAATAGCATCAAACCTCATCGTCGTGGCTTTGCGGTGAGGAGAGTGCTGTCAAATTATCTTGGAGTAGAGACAAAGACCACTAAGATATGCAGCAACTCAACTGAGGTGAAATGTTCGAACCCAAGTAGCAAGAAAACTGAACAACAACGTGAGAAGAAACCATGCACACTCAAAAACAAAACCAAATGA 1803 0.437 MDVFPSKNETSQNKTDGVSSCLTDSTADSRETSFCASTSSVTVEEAKAKGSSSPAPLGWPILKATLSKRSNSHEKENEHKSHLEDTKLTRIGLKLSEVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPSEKKEMWQREVEWLVSVSDYIVELMPSWQTFPDGSKLEVMTCRPRTDIFINLPALRKLDNMLLEILDSFTSTEFWYVDQGIVAAEADCSASFRKTIQRQEEKWWLPVPRVPPAGLSEDSRKQLNHSRECANQILKAAMAINNIALADMEVPESYLEVLPKNGRTCLGDFIYRYITSEQFSQEYLLDCLDISSEHVALEIANRVEAAIYVWRRRVHSRFLPSPKPNRSTPKSSWEIVKDFMVDGDKRELLADRAESILVSLKQRFPGLSQTTLDTSKIQCNKDVGKSVLESYSRVLESMAFNIVARIDDLLYVDDLTKQSERFALVPTTITTTTVKVVSQQKKVTRPHSVSVSGTVTPNKAAFGRPSFSPASVPLISPARGERTHFLHNNNSIKPHRRGFAVRRVLSNYLGVETKTTKICSNSTEVKCSNPSSKKTEQQREKKPCTLKNKTK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02598 600 Gene3D PRONE domain, subdomain 1 331 472 - -
Vian2g02598 600 Gene3D PRONE domain, subdomain 1 92 330 - -
Vian2g02598 600 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 23 535 IPR038937 GO:0005085
Vian2g02598 600 ProSiteProfiles PRONE domain profile. 88 472 IPR005512 GO:0005085
Vian2g02598 600 MobiDBLite consensus disorder prediction 582 600 - -
Vian2g02598 600 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 466 IPR005512 GO:0005085
Vian2g02598 600 FunFam Rop guanine nucleotide exchange factor 14 330 471 - -
Vian2g02598 600 FunFam Rop guanine nucleotide exchange factor 7 298 428 - -
Vian2g02598 600 MobiDBLite consensus disorder prediction 572 600 - -
Vian2g02598 600 MobiDBLite consensus disorder prediction 1 40 - -
Vian2g02598 600 FunFam Rop guanine nucleotide exchange factor 1 89 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02598 Vian-Chr2 46689832 46692854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02598 - - vum:124834739 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02598 2 46689832 46692854 Vian2g02598 2 46689832 46692854 ECH
Vian2g02598 2 46689832 46692854 Vian7g01614 7 25261531 25264624 ECH
Vian2g02598 2 46689832 46692854 Vian7g01614 7 25261531 25264624 PCT