Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02546 ATGGCTCTTCCTTACATCATTCTCTTATCTCTAACTCTCATCTCTCATACTGCACTCACTTCCTCCACCGAAACCAACACCATCACTCTCCCTCTCTCCCCTATACTCACCAAACCCCAATCCTCCGGTCTCTTCCACTCTCTCAAACTCGCCGCTTCAGCTTCTCTAACTCGGGCCCACCACCTCAAACACCGCCAAAATGCTCCCTCAGTCGCCACGACCCAAGTCTACCCTAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACCCCACCCCAAACCTCCGCCTTCGTTCTCGACACAGGAAGTAGCCTCGTCTGGTTCCCCTGCACTCCCCGCTACATCTGCTCCCACTGTCTCTTCCCAAACATTGACCCCACCAAAATCCACACTTTCATTCCCAAAAATTCCTCCACCGCCAAACTCCTCGGTTGCAGGAACCCCAAATGCGGTTACCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCCAATGCCAACCCAATTCTCAAAACTGTTCCGTCGCTTGTCCCCCTTATATTATCGAATACGGGTTGGGCTCCACTGCGGGCCTTTTACTCCTCGACAATCTCAATTTCCCTTCAAAAATTGTTCCCCAATTTCTCGTCGGTTGCTCCATCCTCTCCGTCCGCCAACCCTCCGGCATCGCCGGCTTCGGTCGCGGCCAAGAGTCTCTCCCTTCGCAAATGGCCCTCAAGAGATTCTCTTACTGCTTACTCTCACACAGCTTCGACGACTCCACGGAAAGCAGCGACCTCGTTTTACAAATTAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGCTACACGCCGTTTCACCCCAACCCTTCTGCCAGCAACCCCGCCTTCGTGGAATATTACTATCTCAGCCTCCGTAAGGTCATTGTCGGTGGCAAGAACGTTAAGATTCCGTTTAGCTTTTTGGACCCCGGCTCTGACGGTCACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACTTTCATGGAACGCCCCGTTTATGATTTGGTGGCCCAAGAGTTTGTGAAGCAGTTGGGGAATTTTTCCAGGGCGGAGGACGTTGAGGCTCAATCTGGGTTGGGTCCCTGCTTTAATACTTCCGGCGCCAAGACCGTGGATTTCCCGGAGTTTACTTTTCAATTCAAAGGCGGCGCGAAAATGACGCTGCCGGTTGAAAATTATTTCTCCTTGATCGACGACTCGGAGGTGGTGTGTCTGACCGTCGTCTCCGACGGTGGAGCCGGTCCGGCGAAGATGTCCGGTCCCGCCATCATTTTGGGGAACTATCAGCAGCAAAATTTCCACATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGCCCTCAGAGTTGCAAAAGGAAAACTTAG 1398 0.53 MALPYIILLSLTLISHTALTSSTETNTITLPLSPILTKPQSSGLFHSLKLAASASLTRAHHLKHRQNAPSVATTQVYPKSYGGYSIDLNFGTPPQTSAFVLDTGSSLVWFPCTPRYICSHCLFPNIDPTKIHTFIPKNSSTAKLLGCRNPKCGYLFGSDLQSRCPQCQPNSQNCSVACPPYIIEYGLGSTAGLLLLDNLNFPSKIVPQFLVGCSILSVRQPSGIAGFGRGQESLPSQMALKRFSYCLLSHSFDDSTESSDLVLQISSTGDTKTNGLSYTPFHPNPSASNPAFVEYYYLSLRKVIVGGKNVKIPFSFLDPGSDGHGGTIVDSGSTFTFMERPVYDLVAQEFVKQLGNFSRAEDVEAQSGLGPCFNTSGAKTVDFPEFTFQFKGGAKMTLPVENYFSLIDDSEVVCLTVVSDGGAGPAKMSGPAIILGNYQQQNFHIEYDLENERFGFGPQSCKRKT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02546 465 Gene3D Acid Proteases 59 259 IPR021109 -
Vian2g02546 465 Gene3D Acid Proteases 263 465 IPR021109 -
Vian2g02546 465 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Vian2g02546 465 PRINTS Pepsin (A1) aspartic protease family signature 433 448 IPR001461 GO:0004190|GO:0006508
Vian2g02546 465 PRINTS Pepsin (A1) aspartic protease family signature 327 338 IPR001461 GO:0004190|GO:0006508
Vian2g02546 465 PANTHER OS07G0603500 PROTEIN-RELATED 41 461 - -
Vian2g02546 465 FunFam Aspartyl protease family protein 267 464 - -
Vian2g02546 465 FunFam Aspartic proteinase nepenthesin-2 59 261 - -
Vian2g02546 465 Pfam Xylanase inhibitor C-terminal 296 457 IPR032799 -
Vian2g02546 465 SUPERFAMILY Acid proteases 79 461 IPR021109 -
Vian2g02546 465 Pfam Xylanase inhibitor N-terminal 84 261 IPR032861 -
Vian2g02546 465 CDD pepsin_A_like_plant 83 461 IPR034161 -
Vian2g02546 465 ProSiteProfiles Peptidase family A1 domain profile. 84 457 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02546 Vian-Chr2 46137382 46138779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02546 61 463 Miscellaneous Gene Families AT1G77480 24.083 4.53e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02546 - - gmx:100805927 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02546 2 46137382 46138779 Vian2g02546 2 46137382 46138779 ECH
Vian2g02546 2 46137382 46138779 Vian3g02635 3 40932296 40932961 PCT