LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g02450	ATGACTGAGGAAGGGCAAAACAGCTTATGTCAAGGGAGCATTAGGGAAGGGTTACATAACATAATTTCATCCCAACTGGCGGGCGTTGTATCTCAGACATCTGGAGATTTTCCAATTGATCAAAATCCTGAAAAGGTAGGGTCATTCTCGGATAGCATCTCAGAAATAGAAGACCTGCCAAGCACTGCACAGTTCAATATTTATTATAACAGGACTTCATTCAGAGAGCTTTTAGAGATGGCAAGTTCAACCATGTTGCATGATGTTAATGGCCAAAGAAGCAAATCAACTGAGAGCTTCACAGGAAAAAGCAATCAGTTCATAGACCTGAACCATGACAACCAGATAGGAAACTTGGAAAAATCAGATGCTATTCCATACACTTCAGAAACACCCGCCACCAAAGAATATACTTCGGAAGTAACCCGAAATTCTGGAGCTAACTGCTGTGATCCTCTAACAATAGAGTCCGACTCGAAAGCTGCAGTTGCCAATTCTCAAGGTATTCTATCCCCACTCCATCTCTTGCAGCAAATTAATCATGACCATAATGTTTTTCACATTTCAGAACAAACCCAAGAACCAAAGCAGAAAGAAAGAGAAAAGGATGTTGTTAATCCCAACCATGAAAAGAGGAAAGGAGAGGGTAAGAAAAAATCTGCCTCAGTAAAACCAAAAAGCAAGAAAGAAGAGAAAAAGAACTTTGATTGGGATAGTTTAAGAGTACAAGCACAAGCTCAAGCAGGGAAAAGAGAAAAGACAGAGAAGACCATGGACTCTGTGGACTGGGATGCTGTGAGACGTGCAGATGTCAGTGAAATATCCAAAACAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTCAGAATTTCCTCAATCTATTGGTTGACAAGCACAAGGGCATTGATCTTGAGTGGCTGAGAGACGTTCCACCTGACCAGGCAAAAGAATTCTTGCTCAGCATCAGGGGATTGGGATTGAAAAGTGTGGAGTGTATTCGACTCTTAACACTGCACCATCTTGCTTTTCCGGTGGACACAAATGTTGGACGCATAGTGGTTCGTTTGGGATGGGTACCAATCCAGCCACTGCCAGAGTCACTACAGTTGCATGTTCTAGAATTGTACCCAGTGTTGGATGCGGTACAAAAATATCTCTGGCCTCGACTCTGCAAGCTAGACCAAAGAACATTGTATGAGCTGCACTACCAATTGATTACATTTGGAAAGGTATTCTGTACTAAAAGCAAACCGAATTGCAATGCATGCCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCCTTTGCAAGTGCAAGACTTGCCCTGCCAGGACCAGAGGAGGAGAGAATGCCGAACACAAGTGGAAACAATGCAACCGAGCGGAAGGCATCACAAGTTATAAATCAAACGACCTTGCTTTTCCATGAAAATCCAATTGAAGGGGCACTTCAACAAAACAAGAACGTTCACGCTATAGTTGAAATGCCAGCAAGTCCAGATCCAGAACGTTCCAAATTTTCACAAGGTGATATAGAGGACGCCTTCAAAAAGGATTCATTTGAAATTCCAGACATAAAAGTAGACATGACAAAGTTCGCTTTGAGCATACAAAACTATGTGCAACAAAACATGGAACTTCAAGAAGGAGAAATGTCAAAGGCCTTGGTTGCTTTAAATCCAGATGTGGCATGCATCCCTACACCCAAGCTGAAGAATGTGAGCAAGTTGAGAACAGAGCATTACGTTTATGAACTACCCGACTCACATCCTCTTCTGAAAGGGTGGCAAACGCGAGAACCAGATGATCCAGGCAAATACCTTCTAGCTATATGGACCCCAGGGGAGACAGCAGACTCCATACAGCCACCAGAAAGAAAATGCAGCTCTCAGGATAGTGGCCAGCTTTGTAAAGAAAATGAATGTTATGAATGCAACAGTTTCCGTGAAGTAAATTCAAAGATAGTTCGAGGAACTATCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCACTAAACGGGACCTACTTTCAAGTCAATGAGGTTTTTGCTGATAATGAGTCAAGTTTAAACCCAATTAGTGTTCCCCGTAGTTGGATCTGGAACCTCGGTAGGAGAACAGTATATTTTGGAACCTCCGTGTCATCGATTTTTAAAGGCTTATCGACACAAGACATTCAACAATGCTTTTGGAGAGGATATGTATGCGTGCGAGGATTTGACAGGGAAAGGAGAGCGCCTCGGCCACTGTTGGCTAGATTGCACTTCACAGCTAGCAGGACGCCTAAGACGCCTAAGACGCCTAAGACGCCTAAGACGCCTAAGACGCCTAAGACGCCTAAGAAAAAGGGTAACACCGAAAAGATGTTGAAACAACAAAGTGATTTAAACAAAACAAAAAATCAGCCAGAATTGTTTTCCAGTATTCAGGAGACCAGTGAAGCGCCGAGACAATAG	2472	0.4304	MTEEGQNSLCQGSIREGLHNIISSQLAGVVSQTSGDFPIDQNPEKVGSFSDSISEIEDLPSTAQFNIYYNRTSFRELLEMASSTMLHDVNGQRSKSTESFTGKSNQFIDLNHDNQIGNLEKSDAIPYTSETPATKEYTSEVTRNSGANCCDPLTIESDSKAAVANSQGILSPLHLLQQINHDHNVFHISEQTQEPKQKEREKDVVNPNHEKRKGEGKKKSASVKPKSKKEEKKNFDWDSLRVQAQAQAGKREKTEKTMDSVDWDAVRRADVSEISKTIKERGMNNMLAERIQNFLNLLVDKHKGIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIVVRLGWVPIQPLPESLQLHVLELYPVLDAVQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEERMPNTSGNNATERKASQVINQTTLLFHENPIEGALQQNKNVHAIVEMPASPDPERSKFSQGDIEDAFKKDSFEIPDIKVDMTKFALSIQNYVQQNMELQEGEMSKALVALNPDVACIPTPKLKNVSKLRTEHYVYELPDSHPLLKGWQTREPDDPGKYLLAIWTPGETADSIQPPERKCSSQDSGQLCKENECYECNSFREVNSKIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADNESSLNPISVPRSWIWNLGRRTVYFGTSVSSIFKGLSTQDIQQCFWRGYVCVRGFDRERRAPRPLLARLHFTASRTPKTPKTPKTPKTPKTPKTPKKKGNTEKMLKQQSDLNKTKNQPELFSSIQETSEAPRQ	823

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g02450	823	MobiDBLite	consensus disorder prediction	130	149	-	-
	Vian2g02450	823	Pfam	RRM in Demeter	661	761	IPR028925	-
	Vian2g02450	823	MobiDBLite	consensus disorder prediction	190	238	-	-
	Vian2g02450	823	SMART	ccc3	415	435	IPR003651	GO:0051539
	Vian2g02450	823	Gene3D	-	337	449	IPR023170	-
	Vian2g02450	823	SMART	endo3end	240	414	IPR003265	GO:0006284
	Vian2g02450	823	FunFam	DNA glycosylase/AP lyase ROS1	336	444	-	-
	Vian2g02450	823	SUPERFAMILY	DNA-glycosylase	256	435	IPR011257	GO:0003824\|GO:0006281
	Vian2g02450	823	PANTHER	TRANSCRIPTIONAL ACTIVATOR DEMETER	133	769	IPR044811	GO:0019104\|GO:0035514\|GO:0080111
	Vian2g02450	823	Pfam	Permuted single zf-CXXC unit	627	657	IPR028924	-
	Vian2g02450	823	CDD	ENDO3c	262	380	IPR003265	GO:0006284
	Vian2g02450	823	MobiDBLite	consensus disorder prediction	760	823	-	-
	Vian2g02450	823	Gene3D	Hypothetical protein; domain 2	240	336	-	-
	Vian2g02450	823	MobiDBLite	consensus disorder prediction	190	240	-	-
	Vian2g02450	823	MobiDBLite	consensus disorder prediction	795	823	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g02450	Vian-Chr2	45029580	45033798	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g02450	-		-	var:108322433	1580.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g02450	2	45029580	45033798	Vian2g02450	2	45029580	45033798	ECH
	Vian2g02450	2	45029580	45033798	Vian3g02132	3	30337901	30348740	PCT