Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02138 ATGGAGCCAAAGTGCACCATAAACTGTCGCCGCTCGGAGTTCGTTCCGACCCCTCTGCCGGAGAGTCCTCGAGTGCCCATGGAGTTTCTGTCACGCTCATGGAGTGCCTCTGCTCTTGAGGTTTCCAAAGCTCTTTCACATCACCACTCCTCTCTCTCCTCTTCTTGCATGCCTAATTCAAACAACACTTCCATTCCGGAGGAAACTGTTCCCAACAACACCAACACCACCGCCTTTCTCTCTGAAGATTTCTCCACCATGTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCTCAGCTTGTCCTTGAACGCATTATGTCACAATCCACAAGAGAGGAAGTGTCTCCGTTAACGTCGGGTAGGTTATCTCACAGCAGCGAGCCTTTGAATGGCGGTGGTTCCTTAACCGGAACAGATAGCCCTCCGATTTCACCTTCGGATGAGTTTGATGACGTTGTTAAGTTCTTTCGGGCAAATAATTCAATTCACCCTTTGTTCAATGGTGGACGAGCCAGTGCAACCATTGGCAACGGCACAGCATGCTCAGGACCAAAAACTGTTGGAAGATGGTTAAAGGACCGAAGAGAGAAGAAGAAAGAAGAAAACAGAACCCATACTGCTCAGCTGCATGCCACTATTTCAGTGGCTGCAGTGGCTGCTGCCGTTGCAGCTATTGCGGCTGCAACAGCAGGCTCGTCTGCTCCCAGCAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCTACATTAGTTGCTGCGCAGTGTGTAGAGGCTGCAGAAGCTATGGGGGCCGAGCGTGACCACCTTGCTTCTGTCATCAGCTCTGCTGTGAATGTCCGTTCCCATGATGATATTACTACTCTTACAGCTGCAGCTGCCACAGCTCTACGAGGAGCGGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATAGCCACAGTTACGCCACTGGAGCGAGGCATAGGGGGGATTGGACTATGTGGTAAAAGTATTAACAGCAATACTAGCAACACCAGCACCAGTGATAGCGGGGAAGTTTTCAATGGAGAAGATTTTCTAGGTGCCTGCAGCCAAGAGCTTATTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTCTATATACATAGAACCGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTGGCAGGAACAATTACCAAAAAGAAAAAGAATGTTGTGTTAGATATCTGCATGGATTTACCAGCATGGCCAGGGAGACATCTGTTTGATGATGGTGAAAAGAGACGCTACTTTGGATTGAAGACGGACCAAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAACGAGAATATGACATCTGGACACAAGGGGTTTCGAGACTACTCTCCATTGTAGCACAGAGGCAAAACAGATATGGAAATTAA 1467 0.4819 MEPKCTINCRRSEFVPTPLPESPRVPMEFLSRSWSASALEVSKALSHHHSSLSSSCMPNSNNTSIPEETVPNNTNTTAFLSEDFSTMSKNQFSFASSATSQLVLERIMSQSTREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRASATIGNGTACSGPKTVGRWLKDRREKKKEENRTHTAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVISSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEVFNGEDFLGACSQELIAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICMDLPAWPGRHLFDDGEKRRYFGLKTDQRGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNRYGN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02138 488 MobiDBLite consensus disorder prediction 112 149 - -
Vian2g02138 488 Pfam Auxin canalisation 20 327 IPR008546 -
Vian2g02138 488 MobiDBLite consensus disorder prediction 51 72 - -
Vian2g02138 488 Pfam Plant pleckstrin homology-like region 374 479 IPR013666 -
Vian2g02138 488 MobiDBLite consensus disorder prediction 112 145 - -
Vian2g02138 488 PANTHER EXPRESSED PROTEIN 16 480 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02138 Vian-Chr2 41278664 41281960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02138 - - gmx:100793202 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02138 2 41278664 41281960 Vian2g02138 2 41278664 41281960 ECH
Vian2g02138 2 41278664 41281960 Vian3g01860 3 21534923 21536299 PCT