Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02109 ATGGAGCTTAGCAAAGTAACGCTCGAGATCTTCTCCAAACTCGAGCAGCAATGGCTTTCCCACTACGAAGCCACATCCAAAACCCGCATTCTCAGTATCGACGGCGGAGGAACCACCGCCATTGTCTCCGGCGCAGCCCTCATCCATCTCGAGGACCAGATCCGAGCCCAAACCAGCGATCCCCACGCGCAAATCGCTGATTATTTCGACATCATCGCCGGAACCGGTATTGGCGCCATCCTCGCCGCAATGATTACCGCCGACGACGGCTTCGGCCGGCCTCTCTACACTGCCCGTGAGGCTGTCCACTTCGTCGCCGAGAGCAATAGCGAACTGTTCAAGCCGAAGCGCTCCGGCGTGTTCCGCCGCCGCCGCCGATTCTCAGCGCGGAGCATGGAAAACGCGCTGAAGCGTGTTTTTCAAAGAAAAGAGGAAGAGCGACGGCTGTTGACTATAAAGGACACGTGTAAGCCTCTGCTCATCCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTTGTGTTCTCCCGAGCCGACGCATCGGAGTCACCGAGTTTCAACTTCGACCTTTGGAAGGCGTGCCGAGCCACTTCAGCCACGCCAGGCCTCTTCGCGCCATTCCATTTCGCCTCCGTCGACGGTAAGACCTCGTGCGCCGCCGTTGACGGCGGCCTGGTGATGAATAACCCGGCGGCAGCGGCCATCACGCACGTCCTCCACAATAAGCGCGACTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTCGTGCTCTCGATCGGAAACGGAGCGCCGGCTAAGAGAATAAACACCGCCGGTGAGTGCTCCACGTCGACGGTGGTTGACATTGCGCTTGACGGTGTTTCCGAAACGGTTGACCAGATGTTAGGGAACGCCTTCTGTTGGAACCGTACAGATTATGTCAGGATTCAGGCGTTTGGTTTGGGAGAAGGAAAAGAAGAGAAGGTGCTGAACGAGAGAGTGCTGGAATCGTTACCGTTTGGTGGAAAACGATTACTGCAAGAAACTAACGCAAACAGAATCGAGAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAGACTAGTCTGCCACCTAGTCCCTGCAAGGTGCCGCCGTAA 1113 0.5669 MELSKVTLEIFSKLEQQWLSHYEATSKTRILSIDGGGTTAIVSGAALIHLEDQIRAQTSDPHAQIADYFDIIAGTGIGAILAAMITADDGFGRPLYTAREAVHFVAESNSELFKPKRSGVFRRRRRFSARSMENALKRVFQRKEEERRLLTIKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFDLWKACRATSATPGLFAPFHFASVDGKTSCAAVDGGLVMNNPAAAAITHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRINTAGECSTSTVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGKEEKVLNERVLESLPFGGKRLLQETNANRIESFVQRLVATGKTSLPPSPCKVPP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02109 370 PANTHER PATATIN-LIKE PROTEIN 6 1 367 - -
Vian2g02109 370 Pfam Patatin-like phospholipase 31 234 IPR002641 GO:0006629
Vian2g02109 370 SUPERFAMILY FabD/lysophospholipase-like 27 315 IPR016035 -
Vian2g02109 370 CDD Pat17_PNPLA8_PNPLA9_like 30 330 - -
Vian2g02109 370 Gene3D Cytosolic phospholipase A2 catalytic domain 17 361 - -
Vian2g02109 370 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02109 Vian-Chr2 40893557 40894828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02109 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 69.705 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02109 - - gmx:100806989 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02109 2 40893557 40894828 Vian2g02109 2 40893557 40894828 ECH
Vian2g02109 2 40893557 40894828 Vian3g01883 3 21944879 21946160 PCT