Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01980 ATGTTTCGTTTCATGGTTTTGATGCTGACTGACTTAGAAGCCGATTTTATCAACCCATATGATGCTTCATCAAGGATTAATTACTTCATCGTTCCTGAGTTTATTGGGCAGGGATTGTTGTACATGAAACAGCAGCATCTCATCGATGTTACTGAAGTGTTTAGAGCACTTAACTCTGAGAAGAAATTTCGCTTGGCCAAACTTGCGTATTACTTAACAATCATCATTATAACTGTCTTCAGGCTTGTATTGATGCTTGTCTACTATTTAGATTCTGAAGATGAATGA 288 0.3681 MFRFMVLMLTDLEADFINPYDASSRINYFIVPEFIGQGLLYMKQQHLIDVTEVFRALNSEKKFRLAKLAYYLTIIIITVFRLVLMLVYYLDSEDE 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01980 95 Pfam Cornichon protein 4 40 IPR003377 GO:0016192
Vian2g01980 95 Pfam Cornichon protein 41 80 IPR003377 GO:0016192
Vian2g01980 95 PANTHER CORNICHON-RELATED 40 80 - -
Vian2g01980 95 SMART Cornichon_2 1 80 IPR003377 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01980 Vian-Chr2 39424735 39432251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01980 K20368 - gmx:100527262 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01980 2 39424735 39432251 Vian2g01980 2 39424735 39432251 ECH
Vian2g01980 2 39424735 39432251 Vian3g02502 3 38961814 38966684 PCT